DRSC/TRiP Functional Genomics Resources

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Protein Alignment CARPA and Car1

DIOPT Version :9

Sequence 1:NP_001284986.1 Gene:CARPA / 31687 FlyBaseID:FBgn0029962 Length:333 Species:Drosophila melanogaster
Sequence 2:NP_001101130.1 Gene:Car1 / 310218 RGDID:1309780 Length:261 Species:Rattus norvegicus


Alignment Length:261 Identity:86/261 - (32%)
Similarity:135/261 - (51%) Gaps:7/261 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 WTYDGISGPSFWGLINPQWNMCNKGRRQSPIDVVPDKLLFDPYLRPLHIDKHKVSG-TLHNTGQS 102
            |.||..:||..|..:.|..|    |..|||||:...:...|..|:|:.:..:..:. .:.|.|.|
  Rat     6 WGYDSKNGPDQWSKLYPIAN----GNNQSPIDIKTSEAKHDSSLKPVSVSYNPATAKEIVNVGHS 66

  Fly   103 LVFRVDKDTKQHVNISGGPLAYRYQFEEIYIHYGTENVRGSEHFIQGYSFPGEIQIYGFNKELYH 167
            .....|..:.|.| :.|||||..|:..:.:.|:|..|..||||.:.|..:.||:.:..:|...|.
  Rat    67 FHVVFDDSSNQSV-LKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGAKYSGELHLVHWNSAKYS 130

  Fly   168 NMSEAQHKSQGIVGLSLMVQIGETPNPELRIITSTFNKVLYRGFSTPIRHISVRSLLPNTDHYIT 232
            :.:||..|:.|:..:.:::::|.. ||.|:.:....:.|..:|...|..:....||||::..|.|
  Rat   131 SAAEAISKADGLAIIGVLMKVGPA-NPNLQKVLDALSSVKTKGKRAPFTNFDPSSLLPSSLDYWT 194

  Fly   233 YEGSTTHPGCWESTVWIIVNKPIYITKQELYQLRRLMQGSESTPKAPLGNNARPVQSLHHRTVRT 297
            |.||.|||...||..|:|..:.|.::.::|.|||.|:..:|..|..|:.:|.||.|.|..||||.
  Rat   195 YFGSLTHPPLHESVTWVICKESISLSPEQLAQLRGLLSSAEGEPAVPVLSNHRPPQPLKGRTVRA 259

  Fly   298 N 298
            :
  Rat   260 S 260

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CARPANP_001284986.1 alpha_CARP_X_XI_like 46..300 CDD:239395 83/254 (33%)
Car1NP_001101130.1 alpha_CA 2..261 CDD:294017 86/261 (33%)