DRSC/TRiP Functional Genomics Resources

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Protein Alignment CARPA and Ca5b

DIOPT Version :9

Sequence 1:NP_001284986.1 Gene:CARPA / 31687 FlyBaseID:FBgn0029962 Length:333 Species:Drosophila melanogaster
Sequence 2:NP_001005551.1 Gene:Ca5b / 302669 RGDID:1549783 Length:317 Species:Rattus norvegicus


Alignment Length:257 Identity:74/257 - (28%)
Similarity:129/257 - (50%) Gaps:10/257 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 PQW---NMCNKGRRQSPIDVVPDKLLFDPYLRPLHIDKHKVSGTLH--NTGQSLVFRVDKDTKQH 114
            |.|   ::...|.|||||::.....::||.|:||.| .:..:..||  |.|.|.:...:..|.:.
  Rat    50 PLWENLDLVPAGDRQSPINIRWRDSVYDPGLKPLTI-SYDPATCLHIWNNGYSFLVEFEDTTDKS 113

  Fly   115 VNISGGPLAYRYQFEEIYIHYGTENVRGSEHFIQGYSFPGEIQIYGFNKELYHNMSEAQHKSQGI 179
            | |.||||.:.|:.::.:.|:|..:..||||.:....:|.|:.:..:|...:.:..:|..:..|:
  Rat   114 V-IEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVKFESFEDAALEENGL 177

  Fly   180 VGLSLMVQIGETPNPELRIITSTFNKVLYRGFSTPIRHISVRSLLPNTDHYITYEGSTTHPGCWE 244
            ..:.:.:::|: .:.||:.:..|...:.::.............|:|....|.||.||.|.|...|
  Rat   178 AVIGVFLKLGK-HHKELQKLVDTLPSIKHKDTLVKFGSFDPSCLMPTCPDYWTYSGSLTTPPLSE 241

  Fly   245 STVWIIVNKPIYITKQELYQLRRLMQGSESTPKAPLGNNARPVQSLHHRTVRTNI--DFKRN 304
            |..|||..:|:.:...:|.|.|.|:..||...:..:.:|.||:|.|.:||||::.  |:..|
  Rat   242 SVTWIIKKQPVEVDHDQLEQFRTLLFTSEGEKEKRMVDNFRPLQPLMNRTVRSSFRHDYVLN 303

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CARPANP_001284986.1 alpha_CARP_X_XI_like 46..300 CDD:239395 72/251 (29%)
Ca5bNP_001005551.1 alpha_CA 61..296 CDD:412109 70/237 (30%)