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Protein Alignment CARPA and Ca4

DIOPT Version :9

Sequence 1:	NP_001284986.1	Gene:	CARPA / 31687	FlyBaseID:	FBgn0029962	Length:	333	Species:	Drosophila melanogaster
Sequence 2:	NP_062047.1	Gene:	Ca4 / 29242	RGDID:	2242	Length:	309	Species:	Rattus norvegicus

Alignment Length:	292	Identity:	75/292 - (25%)
Similarity:	129/292 - (44%)	Gaps:	37/292 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly    23 IVLLCSSEVLSSWEE-WWTYD--------GISGPSFWGLINPQWNMCNKGRRQSPIDVVPDKLLF 78
            :.||..:.|..|.|: .|.|:        ..|||.       ||....|..:||||::|..|...
  Rat     5 LALLALAYVAPSTEDSHWCYEIQAKEPNSHCSGPE-------QWTGDCKKNQQSPINIVTSKTKL 62

  Fly    79 DPYLRPLHI------DKHKVSGTLHNTGQSLVFRVDKDTKQHVNISGGPLAYRYQFEEIYIHYGT 137
            :|.|.|...      .|.:|....|:...||        .:.:.|.||.|..:|:..::::|:..
  Rat    63 NPSLTPFTFVGYDQKKKWEVKNNQHSVEMSL--------GEDIYIFGGDLPTQYKAIQLHLHWSE 119

  Fly   138 ENVRGSEHFIQGYSFPGEIQIYGFNKELYHNMSEAQHKSQGIVGLSLMVQIGETPNPELRIITST 202
            |:.:||||.|.|..|..|:.:..........:.::..|.: |..|:.||::|...|...:.:...
  Rat   120 ESNKGSEHSIDGKHFAMEMHVVHKKMTTGDKVQDSDSKDK-IAVLAFMVEVGNEVNEGFQPLVEA 183

  Fly   203 FNKVLYRGFSTPIRHISVRSLLP---NTDHYITYEGSTTHPGCWESTVWIIVNKPIYITKQELYQ 264
            .:::.....::.:....::.:||   ....|..|:||.|.|||.|:.:|.:..:||.|.|.:..:
  Rat   184 LSRLSKPFTNSTVSESCLQDMLPEKKKLSAYFRYQGSLTTPGCDETVIWTVFEEPIKIHKDQFLE 248

  Fly   265 L-RRLMQGSESTPKAPLGNNARPVQSLHHRTV 295
            . ::|....|.  |..:.:|.||:|.|.:|.|
  Rat   249 FSKKLYYDQEQ--KLNMKDNVRPLQPLGNRQV 278

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.