DRSC/TRiP Functional Genomics Resources

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Protein Alignment CARPA and Car9

DIOPT Version :9

Sequence 1:NP_001284986.1 Gene:CARPA / 31687 FlyBaseID:FBgn0029962 Length:333 Species:Drosophila melanogaster
Sequence 2:NP_647466.2 Gene:Car9 / 230099 MGIID:2447188 Length:437 Species:Mus musculus


Alignment Length:265 Identity:68/265 - (25%)
Similarity:123/265 - (46%) Gaps:21/265 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 WTYDGISGPSFWGLINPQWNMCNKGRRQSPIDVVPDKLLFDPYLRPLHIDKHKVSG----TLHNT 99
            |:|.|.       |:.||.:....||.|||:|:..::..|...|:||.:..:::..    :|.|.
Mouse   120 WSYGGT-------LLWPQVSPACAGRFQSPVDIRLERTAFCRTLQPLELLGYELQPLPELSLSNN 177

  Fly   100 GQSLVFRVDKDTKQHVNISGGPLAYRYQFEEIYIHYGTENVRGSEHFIQGYSFPGEIQIYGFNKE 164
            |.::...:....|..:    || ...|:..::::|:||.:..||||.:.|:.||.||.:...: .
Mouse   178 GHTVQLTLPPGLKMAL----GP-GQEYRALQLHLHWGTSDHPGSEHTVNGHRFPAEIHVVHLS-T 236

  Fly   165 LYHNMSEAQHKSQGIVGLSLMVQIGETPNPELRIITSTFNKVLYRGFSTPIRHISVRSLLP-NTD 228
            .:..:.||..:..|:..|:..:|.....|.....:.|...::...|....|..:.|.:||| :..
Mouse   237 AFSELHEALGRPGGLAVLAAFLQESPEENSAYEQLLSHLEEISEEGSKIEIPGLDVSALLPSDLS 301

  Fly   229 HYITYEGSTTHPGCWESTVWIIVNKPIYITKQELYQLRRLMQGSESTPKAPLGNNARPVQSLHHR 293
            .|..||||.|.|.|.:..:|.:.|:.:.::.::|:.|...:.|...   :.|..|.|..|.|:.|
Mouse   302 RYYRYEGSLTTPPCSQGVIWTVFNETVKLSAKQLHTLSVSLWGPRD---SRLQLNFRATQPLNGR 363

  Fly   294 TVRTN 298
            |:..:
Mouse   364 TIEAS 368

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CARPANP_001284986.1 alpha_CARP_X_XI_like 46..300 CDD:239395 65/258 (25%)
Car9NP_647466.2 Proteoglycan-like (PG). /evidence=ECO:0000250 32..95
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 34..118
Catalytic. /evidence=ECO:0000250 96..390 68/265 (26%)
alpha_CA 128..370 CDD:294017 64/250 (26%)