DRSC/TRiP Functional Genomics Resources

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Protein Alignment CARPA and ca4.2

DIOPT Version :9

Sequence 1:NP_001284986.1 Gene:CARPA / 31687 FlyBaseID:FBgn0029962 Length:333 Species:Drosophila melanogaster
Sequence 2:XP_002933882.2 Gene:ca4.2 / 100489625 XenbaseID:XB-GENE-5952677 Length:302 Species:Xenopus tropicalis


Alignment Length:310 Identity:85/310 - (27%)
Similarity:134/310 - (43%) Gaps:67/310 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 CSAIVLLCSSEVL---SSWEEWWTYD-------GISGPSFWGLINPQWNMCNKGRRQSPIDVVPD 74
            |.::.||.|..::   ::.|..|.|:       | .||.|||   ..:..|.| ..||||:|:..
 Frog     4 CFSLALLVSLSLIKDSAAAEGDWCYEIQGHQTLG-CGPRFWG---EHYPTCAK-NHQSPINVLTK 63

  Fly    75 KLLFDPYLRPLHIDKHKVSG---TLHNTGQSLVFRVDKDTKQHVNISGGPLAYRYQFEEIYIHYG 136
            |.:||..|:|.|...:.::|   .:.|.|.|.  :||..|  .:.||||.|:..|...:.:.|:|
 Frog    64 KAVFDKALKPFHFKGYNITGRHLNITNNGHSA--QVDLPT--GIEISGGGLSETYIAAQFHFHWG 124

  Fly   137 TENVRGSEHFIQGYSFP----------------GEIQIYG-FNKELYHNMSEAQHKSQGIVGLSL 184
            ::...||||.:.|..:|                |::.:.| |.:|...|.:|..         ||
 Frog   125 SDEFYGSEHTVDGEKYPMELHIVHKRKTSTGGFGDLAVLGFFYEETAKNNTEYN---------SL 180

  Fly   185 MVQIGETPNPE-LRIITSTFNKVLYRGFSTPIRHISVRSLLPNTDHYITYEGSTTHPGCWESTVW 248
            :..:|.....: .:..::|.:|::      ||..:.|         |..|.||.|.|.|.|:.:|
 Frog   181 IESLGHISTKDGYKNFSATLDKLI------PINELKV---------YYRYNGSLTTPPCNETVIW 230

  Fly   249 IIVNKPIYITKQELYQLRRLMQGSESTPKAPLGNNARPVQSLHHRTVRTN 298
            .:.|..|.::|   .||:........|.|..:..|.||||....|.|.|:
 Frog   231 TLFNTTIKLSK---LQLQAFHNSLNFTEKQRMVENFRPVQKRSDRIVYTS 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CARPANP_001284986.1 alpha_CARP_X_XI_like 46..300 CDD:239395 77/274 (28%)
ca4.2XP_002933882.2 alpha_CA_IV_XV_like 52..275 CDD:239391 69/254 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1377476at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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