DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7a and Grid2

DIOPT Version :9

Sequence 1:NP_572406.1 Gene:Ir7a / 31686 FlyBaseID:FBgn0029961 Length:614 Species:Drosophila melanogaster
Sequence 2:NP_077355.2 Gene:Grid2 / 79220 RGDID:68368 Length:1007 Species:Rattus norvegicus


Alignment Length:672 Identity:121/672 - (18%)
Similarity:242/672 - (36%) Gaps:134/672 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 MTPLVAAALEILAEQVSPSQSTLAVMDLTQDAEHRDERQEQLMTIILRSVGSEMALR-TFQKPPA 90
            |.|  |.|...::|.|   ::.|...|......:.:.....:..::.||:|....:| ||     
  Rat   234 MNP--ATAKSFISEVV---ETNLVAFDCHWIIINEEINDVDVQELVRRSIGRLTIIRQTF----- 288

  Fly    91 EVPASFVVFLVNSAQAFNTLGFH------------FT---DIHSTREFNFLILLTHRMSSRAERL 140
            .||.:.      |.:.|.  |.|            |.   :|.:...::.::||.:....:.|..
  Rat   289 PVPQNI------SQRCFR--GNHRISSTLCDPKDPFAQNMEISNLYIYDTVLLLANAFHKKLEDR 345

  Fly   141 QVLRDISRTCVR-----FHTSNVILLTEKRDGVVLVYAYRLLNMDCDL-------SVNLELIDI- 192
            :.....|.:|:|     :.....:|.|.|:.||      ..|..|.:.       :|:.|::.. 
  Rat   346 KWHSMASLSCIRKNSKPWQGGRSMLETIKKGGV------NGLTGDLEFGENGGNPNVHFEILGTN 404

  Fly   193 YKNGLFRHGHEARSFNRVLSLS-------------GCPLQVSWYPLPPFVSFIGNSSDPEERAQI 244
            |...|.|...:...:|.|..|:             |..|:|......|||....|.....::.| 
  Rat   405 YGEELGRGVRKLGCWNPVTGLNGSLTDKKLENNMRGVVLRVVTVLEEPFVMVSENVLGKPKKYQ- 468

  Fly   245 WRLTGIDGELIKLLASI--FDFRILLEEPCNKCLSPDIKDDCSGCFDQVIISNSSILIGAMSGSH 307
                |...:::..|::.  |::.|.: .|.:|..||......:|...:::...:.|.|.|::.:.
  Rat   469 ----GFSIDVLDALSNYLGFNYEIYV-APDHKYGSPQEDGTWNGLVGELVFKRADIGISALTITP 528

  Fly   308 QHRSHFSFTSSYHQSSLVFIMHMSSQFGAVAQLAVPFTVIVWLALVVSSLLLVLVLWMRNRLVCG 372
            ...:...||:.|...|:..::..:.:...:.....||.:.:|..:..:.||:.|::::.|.|...
  Rat   529 DRENVVDFTTRYMDYSVGVLLRRAEKTVDMFACLAPFDLSLWACIAGTVLLVGLLVYLLNWLNPP 593

  Fly   373 RSDLASHALQVLTTLMGNPL---------EARSLPRSS-RLRILYAGWLLLVLVLRVVYQGKLFD 427
            |..:.|    :.:|.:.|.:         :...:|.:: ..|::...|.|..|::...|...|..
  Rat   594 RLQMGS----MTSTTLYNSMWFVYGSFVQQGGEVPYTTLATRMMMGAWWLFALIVISSYTANLAA 654

  Fly   428 SFRLPYHKPLPTEISELIRSNYTLINQEYLDY-------------------------YPRELTVL 467
            ...:       |.|...|:|...|..|..:.|                         |.:...::
  Rat   655 FLTI-------TRIESSIQSLQDLSKQTDIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMI 712

  Fly   468 TR-NGSKDRFDYIQGLGKEGKFTTTSLI---ATMEYYNMMHWSTSRLTHIKEHIFLYQMVIYLRR 528
            .| |||::.....|...::.|:...:.:   |.:||..:.....|..| :...:......|.|:.
  Rat   713 NRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCSFYT-VGNTVADRGYGIALQH 776

  Fly   529 HSLLKFAFDRKIKQLLSAGIIGYFVREF----DACQYRKPFEEDYEVTPIPLDSFCGLYYISLIW 589
            .|..:..|.::|.:|..:|.:.....::    ..|......:...:...:.:.|..|::.|....
  Rat   777 GSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCDLYSSVDAKQKGGALDIKSLAGVFCILAAG 841

  Fly   590 LSAAVVAFILELLSQRIVWLRR 611
            :..:.:..:||..     |.||
  Rat   842 IVLSCLIAVLETW-----WSRR 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7aNP_572406.1 None
Grid2NP_077355.2 Interaction with CBLN1 homotrimer. /evidence=ECO:0000250|UniProtKB:O43424 24..345 25/128 (20%)
Periplasmic_Binding_Protein_type1 28..429 CDD:415822 43/218 (20%)
PBP2_iGluR_delta_2 440..806 CDD:270449 69/383 (18%)
Interaction with AP4M1. /evidence=ECO:0000269|PubMed:14572453 921..991
PDZ-binding. /evidence=ECO:0000250 1005..1007
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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