DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7a and grin3ba

DIOPT Version :9

Sequence 1:NP_572406.1 Gene:Ir7a / 31686 FlyBaseID:FBgn0029961 Length:614 Species:Drosophila melanogaster
Sequence 2:XP_021323058.1 Gene:grin3ba / 566411 ZFINID:ZDB-GENE-070912-354 Length:1118 Species:Danio rerio


Alignment Length:795 Identity:139/795 - (17%)
Similarity:246/795 - (30%) Gaps:299/795 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 PEAMTPLVAAAL-----EILAEQVSPSQSTLAVMDLTQDAEH--------------------RDE 63
            |..::.|:.|.|     :..|..|.|......:::..|...|                    .:.
Zfish   164 PSGLSDLLLAVLLRGGWQGGAATVCPGGGNTGMLEELQQRGHLGLDGAHWHLWETLNLSRLEENI 228

  Fly    64 RQEQLMTIILRSVGSEMALRTFQKPPAEVPASFVVFLVNSAQAFNTLGFHFTDIHSTREFNFLIL 128
            .::::|.::     |::..||   |.|  |||.||...:..:...|:      :|...:.:..:.
Zfish   229 SEDKVMELL-----SQLLSRT---PSA--PASSVVLFGSDPECTATV------LHCAHQLSGTLP 277

  Fly   129 LTHRMSSRAERLQVLR------------DISRTCVRFHTSNVILLTEKRDGVVLVYAYRLLNMDC 181
            ..|.:......|..|.            :::|..:.|:..:.:.|..:     .|||..::..|.
Zfish   278 PMHWIMGYPLSLDSLHSIGSPLGLMAYGEVNRKPLNFYIRDTLQLIGR-----AVYAATMVRPDL 337

  Fly   182 DLSVNLE---------------------LIDIYKNGLFRHGHEARSFNRVL--------SLSGCP 217
            .|..|:.                     |.:....||.......|||:|||        ||...|
Zfish   338 ALIQNMVNCFDKPNKHELPSSGQYLARFLSNTSFTGLTGPVRVERSFSRVLTSQRFHIWSLQRDP 402

  Fly   218 L-QVSWYPLPPFVSFIGNSSDPEERAQIW--------------RLTG-------IDGELIKLLAS 260
            | |.||..:   .|:.....:.||:. :|              ||.|       :.|..::::..
Zfish   403 LGQPSWVTV---ASWQSGRLELEEQG-LWPGVTQHQREDGPGIRLGGRWQAGLPVAGSRLRVVTL 463

  Fly   261 I---FDFRILLEE----PCNK-CLSP-------------------------DIKDDCSG-C---- 287
            :   |.|...::|    |..: ||.|                         |::..|.| |    
Zfish   464 VEHPFVFTREVDEEGQCPAGQLCLDPQTNNSEVLNQLFRELEQTNSSSLPTDMRKCCYGYCIDLL 528

  Fly   288 ----------FDQVIISNS----------SILIG-AMSG----------SHQHRSH-FSFTSSYH 320
                      ||..|:.:.          |.|:| .:||          .:..||. ..|||.:.
Zfish   529 EKLAEDMHFEFDLYIVGDGKYGAWKGGRWSGLVGDLLSGVADMAVTSFSINSARSRVIDFTSPFF 593

  Fly   321 QSSLVFIMHMSSQFGAVAQLAVPFTVIVW----LALVVSSLLLVLVLWM---------RNRLVCG 372
            .:||..::........:.....|....:|    :||.:::|.:.|..|.         |||:   
Zfish   594 STSLGILVRSKDTAAPIGAFMWPLHWSMWVGIFVALHITALFITLYEWNSPFGMTPHGRNRI--- 655

  Fly   373 RSDLASHALQVLTTLMGNPLEARSLPRSSRLRILYAGWLLLVLVLRVVYQG---------KLFD- 427
            |....|.||.:...::.....|...|:....|.|...|.:..|::...|..         |.|: 
Zfish   656 RVFSYSSALNLCYAILFGRTVASKTPKCWTGRFLMNLWAIFCLLVLSSYTANLAAVMVGEKTFEE 720

  Fly   428 --------------SFRL------------------------PYHKPL-----------PTEISE 443
                          .||.                        .::||.           |.::..
Zfish   721 VSGIHDVKLHHPSLGFRFGTVRESSAEDYVKKSFPEMHEYMRRFNKPTTPDGVSTLKTDPPQLDA 785

  Fly   444 LIRSNYTLINQEYLDYYPRELTV------------------LTRNGSK---------------DR 475
            .|.....|..:..:|...:.|||                  ||||.|:               |:
Zfish   786 FIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTRNVSEYVSRYKSDGYMDMLHDK 850

  Fly   476 FDYIQGLGKEGKFTTTSLIATMEYYN------MMHWSTSRLTHIKEHIFLYQMVIYLRRHSLLKF 534
            :..:...||.....|.:|...:::::      .:..:.:.||.:.||.|...::.:||.....|:
Zfish   851 WYKVVPCGKRVFAVTETLQMGIQHFSGLFVLLCVGVAGALLTLLGEHAFFRFILPHLRHQQRFKY 915

  Fly   535 AF--DRKIKQLLSAG 547
            ..  .:||.:.::.|
Zfish   916 WLHTSQKIHRAINMG 930

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7aNP_572406.1 None
grin3baXP_021323058.1 Periplasmic_Binding_Protein_Type_1 26..428 CDD:324556 53/288 (18%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 66/397 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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