DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7a and Grik2

DIOPT Version :9

Sequence 1:NP_572406.1 Gene:Ir7a / 31686 FlyBaseID:FBgn0029961 Length:614 Species:Drosophila melanogaster
Sequence 2:NP_062182.1 Gene:Grik2 / 54257 RGDID:2733 Length:908 Species:Rattus norvegicus


Alignment Length:686 Identity:123/686 - (17%)
Similarity:221/686 - (32%) Gaps:178/686 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 RSLAMGALHPPQPEAMTPLVAAALEILAEQVSPSQSTLAVMDLTQDAEHRDERQEQLMTIILRSV 76
            ::||||.:........|.|...||::...:.|....|...:..|::.:             :.|:
  Rat   241 QALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQ-------------VSSI 292

  Fly    77 GSEMALRTFQKPPAEVPASFVVFLVNSAQAFNTLGFHFTDIHSTREFNFLILLTHRMSSRAERLQ 141
            ..:.::...|.||.  |.|.::.           ||..||.      ..:....|.:|...::..
  Rat   293 IEKWSMERLQAPPK--PDSGLLD-----------GFMTTDA------ALMYDAVHVVSVAVQQFP 338

  Fly   142 VLRDISRTC-----VRFHTSNVILLTEKR----DGVVLVYAYRLLNMDCDLSVNLELIDIYKNGL 197
            .:...|..|     .||.|..:.|:.|..    .|.:.......|..|.||.|    |.:.:.||
  Rat   339 QMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDV----ISLKEEGL 399

  Fly   198 FRHG-------------HEARSFNRVLSLSGCPLQVSWYPLPPFVSF-------IGNSSDPEERA 242
            .:.|             .:.:..|...|||...|.|:.....|:|.|       .||.       
  Rat   400 EKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGND------- 457

  Fly   243 QIWRLTGIDGELIKLLASI--FDFRILLEEPCNKCLSPDIKDDCSGCFDQVIISNSSILIGAMSG 305
               |..|...:|::.|::|  |.:.|.|.|........|:....:|...::|...:.:.:..::.
  Rat   458 ---RFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAI 519

  Fly   306 SHQHRSHFSFTSSYHQSSLVFIMHMSSQFG-AVAQLAVPFTVIVWL-----ALVVSSLLLVLVL- 363
            ::.......|:..:....:..:....:... .|.....|.:..:|:     .|.||.:|.|:.. 
  Rat   520 TYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSCVLFVIARF 584

  Fly   364 ----WMRNRLVCGRSDLASHALQVLTTL---------MGNPLEARSLPRSSRLRILYAGWLLLVL 415
                |.........||:..:...:|.:.         .|:.|    :|::...||:...|....|
  Rat   585 SPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMRQGSEL----MPKALSTRIVGGIWWFFTL 645

  Fly   416 VLRVVYQGKLFDSFRLPYHKPLPTEISELIRSNYTLINQEYLDYYPRELTVLTRNGSKDRFDYIQ 480
            ::...|...| .:|........|.:.::      .|..|..::|                     
  Rat   646 IIISSYTANL-AAFLTVERMESPIDSAD------DLAKQTKIEY--------------------- 682

  Fly   481 GLGKEG---KFTTTSLIATMEYYNMMHWSTSRLTHI-----KEHIFLYQMVI-----YLRRHSLL 532
            |..::|   .|...|.|:|  |..|..:.:||...:     :|.|   |.|:     :|...:.:
  Rat   683 GAVEDGATMTFFKKSKIST--YDKMWAFMSSRRQSVLVKSNEEGI---QRVLTSDYAFLMESTTI 742

  Fly   533 KFAFDRKIKQLLSAGII---GYFVREFDACQYRK----------------------------PFE 566
            :|...|........|:|   ||.|.......||.                            |.|
  Rat   743 EFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEE 807

  Fly   567 EDYEVTPIPLDSFCGLYYISLIWLSAAVVAFILELL 602
            |..|.:.:.:.:..|::.:....|..:|...:.|.|
  Rat   808 ESKEASALGVQNIGGIFIVLAAGLVLSVFVAVGEFL 843

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir7aNP_572406.1 None
Grik2NP_062182.1 Periplasmic_Binding_Protein_Type_1 34..414 CDD:299141 40/208 (19%)
ANF_receptor 52..395 CDD:279440 37/189 (20%)
Periplasmic_Binding_Protein_Type_2 430..800 CDD:304360 70/416 (17%)
Glutamate binding. /evidence=ECO:0000269|PubMed:15721240, ECO:0000269|PubMed:17115050, ECO:0007744|PDB:1S50, ECO:0007744|PDB:1S7Y, ECO:0007744|PDB:2I0B, ECO:0007744|PDB:2I0C 516..518 0/1 (0%)
Lig_chan 562..831 CDD:278489 53/305 (17%)