DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7a and Nmdar2

DIOPT Version :9

Sequence 1:NP_572406.1 Gene:Ir7a / 31686 FlyBaseID:FBgn0029961 Length:614 Species:Drosophila melanogaster
Sequence 2:NP_001014714.1 Gene:Nmdar2 / 31107 FlyBaseID:FBgn0053513 Length:1083 Species:Drosophila melanogaster


Alignment Length:760 Identity:116/760 - (15%)
Similarity:242/760 - (31%) Gaps:242/760 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 SQSTLAVMDLTQDAEHRD-------ERQE--QLMTIILRSVGSEMALRTFQKPPAEVPASFVVFL 100
            |||||. :.|....||:.       ||.:  |...:..:..|.:..::..::..||:...|...:
  Fly   224 SQSTLQ-LQLAPSIEHQSAAMLSILERYKWHQFSVVTSQIAGHDDFVQAVRERVAEMQEHFKFTI 287

  Fly   101 VNSAQAFNTLGFHFTDIHSTREFNFLILLTHRMSSRAERLQVLR--------------------- 144
            :||.....|     :|:.........::|.:  :::.|.:.:||                     
  Fly   288 LNSIVVTRT-----SDLMELVNSEARVMLLY--ATQTEAITILRAAEEMKLTGENYVWVVSQSVI 345

  Fly   145 ---------DISRTCVRFHTSNVILLTEKRDGVVLVYAYRL-------LNMDCDLSVNLELIDIY 193
                     .:....|.|.||:..|:.| ....:.:|:|.:       .|.|..|:......:..
  Fly   346 EKKDAHSQFPVGMLGVHFDTSSAALMNE-ISNAIKIYSYGVEAYLTDPANRDRRLTTQSLSCEDE 409

  Fly   194 KNGLFRHGHEARSFNRVLSLSG-----------------CPLQVS------------WYPLPPF- 228
            ..|.:.:|.....:.|.:|:.|                 ..|::.            |..:..: 
  Fly   410 GRGRWDNGEIFFKYLRNVSIEGDLNKPNIEFTADGDLRSAELKIMNLRPSANNKNLVWEEIGVWK 474

  Fly   229 -----------VSFIGNSSDPE--------------ERAQIWRLTGIDGELIKLLASIFDFRILL 268
                       :::.|||..|.              |.|....|:..|....|.|   .|..:|.
  Fly   475 SWETQKLDIRDIAWPGNSHAPPQGVPEKFHLKITFLEEAPYINLSPADPVSGKCL---MDRGVLC 536

  Fly   269 EEPCNKCLSPDIK-----------DDCSG-CFD-------------------------------- 289
            ....:..::.||.           ..||| |.|                                
  Fly   537 RVAADHEMAADIDVGQAHRNESFYQCCSGFCIDLLEKFAEELGFTYELVRVEDGKWGTLENGKWN 601

  Fly   290 ----QVIISNSSILIGAMSGSHQHRSHFSFTSSYHQSSLVFIMHMSSQFGAVAQLAV--PFTVIV 348
                .::...:.:::.::..:.:..:...|:..:.::.:..:  ::.:.|.::..|.  ||....
  Fly   602 GLIADLVNRKTDMVLTSLMINTEREAVVDFSEPFMETGIAIV--VAKRTGIISPTAFLEPFDTAS 664

  Fly   349 WL-----ALVVSSLLLVLVLWMR-----NRLVCGRSDLASHALQVLTT-------LMGNPLEARS 396
            |:     |:..::.::.|..|:.     .:|....:::..:...:..|       |....:...|
  Fly   665 WMLVGIVAIQAATFMIFLFEWLSPSGYDMKLYLQNTNVTPYRFSLFRTYWLVWAVLFQAAVHVDS 729

  Fly   397 LPRSSRLRILYAGWLLLVLVLRVVYQGKL---------FDSF------RL--PY-HKP------L 437
             ||....|.:...|.|..:|...:|...|         |..|      ||  |: |||      :
  Fly   730 -PRGFTSRFMTNVWALFAVVFLAIYTANLAAFMITREEFHEFSGLNDSRLVHPFSHKPSFKFGTI 793

  Fly   438 PTEISELIRSNYTLINQEYLDYYPR----ELTVLTRNGSKDRF-------DYIQGLGKEGKFTTT 491
            |...::.....|..:...|:..|.:    :......||:.|.|       ||:....::.:..|.
  Fly   794 PYSHTDSTIHKYFNVMHNYMRQYNKTSVADGVAAVLNGNLDSFIYDGTVLDYLVAQDEDCRLMTV 858

  Fly   492 SLIATMEYYNMMHWSTSRLTHIKEHIFLYQMVIYLRRHSLLKFAFDRKIKQLLSAGIIGYFVREF 556
            .....|..|.:.....|:             .:.:....||:|..:..:::|....:.|      
  Fly   859 GSWYAMTGYGLAFSRNSK-------------YVQMFNKRLLEFRANGDLERLRRYWMTG------ 904

  Fly   557 DACQYRKPFEEDYEVT-PIPLDSFCGLYYISLIWLSAAVVAFILE 600
             .|   :|.:::::.: |:.|:.|...:.:.:..:..|.:..:||
  Fly   905 -TC---RPGKQEHKSSDPLALEQFLSAFLLLMAGILLAALLLLLE 945

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7aNP_572406.1 None
Nmdar2NP_001014714.1 PBP1_iGluR_NMDA_NR2 99..490 CDD:107373 41/274 (15%)
PBP2_iGluR_NMDA_Nr2 502..908 CDD:270436 64/434 (15%)
Lig_chan 665..928 CDD:278489 48/286 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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