DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir7a and GRIA4

DIOPT Version :9

Sequence 1:NP_572406.1 Gene:Ir7a / 31686 FlyBaseID:FBgn0029961 Length:614 Species:Drosophila melanogaster
Sequence 2:NP_000820.4 Gene:GRIA4 / 2893 HGNCID:4574 Length:902 Species:Homo sapiens


Alignment Length:364 Identity:58/364 - (15%)
Similarity:129/364 - (35%) Gaps:59/364 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   285 SGCFDQVIISNSSILIGAMSGSHQHRSHFSFTSSYHQSSL-VFIMHMSSQFGAVAQLAVPFTVIV 348
            :|...:::...:.|.|..::.:........|:..:....: :.|.........|.....|....:
Human   483 NGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEI 547

  Fly   349 WLALVVSSLLLVLVLWMRNRLVC-------------GRSDLASHALQVLTTL---MGNPLE--AR 395
            |:.:|.:.:.:.:||::.:|...             |.||...:...:..:|   :|..::  ..
Human   548 WMCIVFAYIGVSVVLFLVSRFSPYEWHTEEPEDGKEGPSDQPPNEFGIFNSLWFSLGAFMQQGCD 612

  Fly   396 SLPRSSRLRILYAGWLLLVLVLRVVYQGKLFDSFRLPYHKPLPTEISELI--------------- 445
            ..|||...||:...|....|::...|...| .:|........|.|.:|.:               
Human   613 ISPRSLSGRIVGGVWWFFTLIIISSYTANL-AAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGS 676

  Fly   446 ------RSNYTLINQEYLDYYPRELTVLTRNGSKDRFDYIQGLGK----EGKFTTTSLIATMEYY 500
                  ||...:..:.:......|.:|.||..:       :|:.:    :|||... |.:||..|
Human   677 TKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTA-------EGVARVRKSKGKFAFL-LESTMNEY 733

  Fly   501 NMMHWSTSRLTHIKEHIFLYQMVIYLRRHSLLKFAFDRKIKQLLSAGIIGYFVREF----DACQY 561
            .........: .:..::......:...:.|.|:...:..:.:|..||::.....::    ..|..
Human   734 IEQRKPCDTM-KVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKGECGP 797

  Fly   562 RKPFEEDYEVTPIPLDSFCGLYYISLIWLSAAVVAFILE 600
            :....:| :.:.:.|.:..|::||.:..|..|::..::|
Human   798 KDSGSKD-KTSALSLSNVAGVFYILVGGLGLAMLVALIE 835

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Ir7aNP_572406.1 None
GRIA4NP_000820.4 PBP1_iGluR_AMPA_GluR4 28..398 CDD:107383
PBP2_iGluR_AMPA_GluR4 414..795 CDD:270445 49/321 (15%)
Glutamate binding. /evidence=ECO:0000250 500..502 0/1 (0%)