DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7a and GRIA3

DIOPT Version :9

Sequence 1:NP_572406.1 Gene:Ir7a / 31686 FlyBaseID:FBgn0029961 Length:614 Species:Drosophila melanogaster
Sequence 2:NP_000819.4 Gene:GRIA3 / 2892 HGNCID:4573 Length:894 Species:Homo sapiens


Alignment Length:420 Identity:78/420 - (18%)
Similarity:133/420 - (31%) Gaps:140/420 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 SVGSEMALRTFQKPPAEVPASFVVFLVNSAQAFNT------LGFHFTDIHSTREFNFLILLTHRM 133
            |:|......|.|:..|   ..|.|.|.|:.|  ||      |.:|...:.|:..|:    :|:..
Human    35 SIGGLFMRNTVQEHSA---FRFAVQLYNTNQ--NTTEKPFHLNYHVDHLDSSNSFS----VTNAF 90

  Fly   134 SSRAER----------LQVLRDISRTCVRFHTSNVILLTEKRDGVVLVYAYRLLNMDCDLSVNLE 188
            .|:..|          ...:..::..|...|||.|.........|..|...|.......||    
Human    91 CSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFPTDADVQFVIQMRPALKGAILS---- 151

  Fly   189 LIDIYKNGLFRHGHEA-RSFNRVLSLSGCPLQVSWYPLPPFVSFIGNSSDPEERAQIWRLTGIDG 252
            |:..||...|.:.::. |.|:.:.::....:|.:|...   ...:||..|.:|            
Human   152 LLGHYKWEKFVYLYDTERGFSILQAIMEAAVQNNWQVT---ARSVGNIKDVQE------------ 201

  Fly   253 ELIKLLASIFDFRILLEEPCNKCLSPDIKDDC-----SGCFDQVIISNSSILIGAMSGSHQHRSH 312
                       ||.::|| .::........||     :...:||:|          .|.|     
Human   202 -----------FRRIIEE-MDRRQEKRYLIDCEVERINTILEQVVI----------LGKH----- 239

  Fly   313 FSFTSSYHQSSLVFIMHMSSQFGAVAQLAVPFTVIVWLALVVSSLLLVLVLWMRNRLVCGRSDLA 377
               :..||        :|.:..|        ||.|                 :..|::.|.:::.
Human   240 ---SRGYH--------YMLANLG--------FTDI-----------------LLERVMHGGANIT 268

  Fly   378 SHALQVLTTLMGNPLEARSLPRSSRLRILYAGWLLLVLVLRVVYQGKLFDSFRLPYHKPLPTEIS 442
              ..|::..  .||:..:.:.|          |:.|             |....|..|..|.:.:
Human   269 --GFQIVNN--ENPMVQQFIQR----------WVRL-------------DEREFPEAKNAPLKYT 306

  Fly   443 ELIRSNYTLINQEYLDYYPRELTVLTRNGS 472
            ..:..:..|:..|...|..|:...::|.||
Human   307 SALTHDAILVIAEAFRYLRRQRVDVSRRGS 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7aNP_572406.1 None
GRIA3NP_000819.4 PBP1_iGluR_AMPA_GluR3 35..409 CDD:380610 78/420 (19%)
PBP2_iGluR_AMPA 422..805 CDD:270433
Glutamate binding. /evidence=ECO:0000250 508..510
Glutamate binding. /evidence=ECO:0000250 686..687
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.