DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7a and glr-4

DIOPT Version :9

Sequence 1:NP_572406.1 Gene:Ir7a / 31686 FlyBaseID:FBgn0029961 Length:614 Species:Drosophila melanogaster
Sequence 2:NP_001254126.1 Gene:glr-4 / 174258 WormBaseID:WBGene00001615 Length:951 Species:Caenorhabditis elegans


Alignment Length:557 Identity:105/557 - (18%)
Similarity:187/557 - (33%) Gaps:191/557 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 DGVVLVYAYRLLNM------DCDLSVNLELIDIYKNGLFR---------HGHEARSFN---RVLS 212
            ||.::....|.|.:      |.....|.|..||..:|:.|         :..|.|.:|   |..:
 Worm   328 DGRIMNEGIRKLKLRNQLTGDVQFKSNGERDDIMYHGVGRINSQFVKLGNWSEKRGWNFDSRYAN 392

  Fly   213 ------------LSGCPLQVSWYPLPPFVSFIGNSSDPEERAQIWRLTGIDGELIKLLASI---- 261
                        |.|..|:|..|...|||...|.:.             .:|..|.||..:    
 Worm   393 RWEFDIDPDSEDLEGLHLRVVVYLEEPFVIKTGENQ-------------YEGFCIDLLNEMTQVL 444

  Fly   262 -FDFRILLEEPCNKCLSPDIKDDCSGCFDQVIISNSSILIGAMSGSHQHRSHFSFTSSYHQSSLV 325
             |::.|:           :::|...|..|:....|.  :|||:.......|..:.|.:|.::.:|
 Worm   445 KFNYTII-----------EVQDGTYGIEDESGRWNG--IIGALQRHEADLSLSAVTITYSRAEVV 496

  Fly   326 F----IMHM-----------SSQFGAVAQLAVPFTVIVWLALVVSSLLLVLVL----------WM 365
            .    .||:           .:..|::.....|.::.||::|::|..::...:          |.
 Worm   497 DFTLPFMHLGISILLARTSEETDKGSLWTFLEPLSLTVWISLLISYCIVSYSMHILAKFSPYEWY 561

  Fly   366 RNRLVCGRSDLAS-----HALQVLTTL---MGNPLEARS--LPRSSRLRILYAGWLLLVLVLRVV 420
            ....:..| |..:     :...||.:.   ||:.::..|  :||::..|::...|.:...::...
 Worm   562 NLERIDER-DFENIKNQKNQFTVLNSFWFTMGSLMQQGSDVIPRAAATRLIAVVWWMFTQIIISS 625

  Fly   421 YQGKLFDSFRLPYHKPLPTEISELIRSNYTLINQEYLDYYPRELTVLTRNGSKDRFDYIQGLGKE 485
            |..:|.....:       ..:|..|.|...|.||:.:.|     .||....:.|.|       :|
 Worm   626 YTAQLAAFLTV-------ERMSTPIESTQDLANQQKIRY-----GVLKSGSTMDFF-------RE 671

  Fly   486 GKFTTTSLIATMEYYNMMHWS------------TSR--LTHIKEHIFLYQMVIYLRRHSLLKFAF 536
            .|         :..|..| ||            :||  :..:|...:.|.|     ..|:|::..
 Worm   672 SK---------IPMYERM-WSVMESSSPGVFVNSSREGIARVKSGGYAYMM-----ESSMLEYYL 721

  Fly   537 DRKIKQLLSAGII---GYFV------------------------------------REFDACQYR 562
            :|..:.....|::   ||.:                                    ||..:|. .
 Worm   722 ERDCELQSIGGLLDSKGYGIALPKGSPLRDILSRTVLQLQERTILEALKNKWWRDRREGPSCG-P 785

  Fly   563 KPFEEDYEVTPIPLDSFCGLYYISLIWLSAAVVAFIL 599
            .|.|:.....|   .:..|::|:.|..|   :|||:|
 Worm   786 PPSEKATNSKP---QNIFGIFYVLLTGL---IVAFLL 816

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7aNP_572406.1 None
glr-4NP_001254126.1 PBP1_iGluR_Kainate 30..385 CDD:107377 13/56 (23%)
ANF_receptor 45..365 CDD:279440 9/36 (25%)
Periplasmic_Binding_Protein_Type_2 410..775 CDD:304360 74/425 (17%)
Lig_chan 533..810 CDD:278489 55/315 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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