DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir7a and Gria4

DIOPT Version :9

Sequence 1:NP_572406.1 Gene:Ir7a / 31686 FlyBaseID:FBgn0029961 Length:614 Species:Drosophila melanogaster
Sequence 2:XP_006509904.1 Gene:Gria4 / 14802 MGIID:95811 Length:912 Species:Mus musculus


Alignment Length:364 Identity:58/364 - (15%)
Similarity:129/364 - (35%) Gaps:59/364 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   285 SGCFDQVIISNSSILIGAMSGSHQHRSHFSFTSSYHQSSL-VFIMHMSSQFGAVAQLAVPFTVIV 348
            :|...:::...:.|.|..::.:........|:..:....: :.|.........|.....|....:
Mouse   483 NGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEI 547

  Fly   349 WLALVVSSLLLVLVLWMRNRLVC-------------GRSDLASHALQVLTTL---MGNPLE--AR 395
            |:.:|.:.:.:.:||::.:|...             |.||...:...:..:|   :|..::  ..
Mouse   548 WMCIVFAYIGVSVVLFLVSRFSPYEWHTEEPEDGKEGPSDQPPNEFGIFNSLWFSLGAFMQQGCD 612

  Fly   396 SLPRSSRLRILYAGWLLLVLVLRVVYQGKLFDSFRLPYHKPLPTEISELI--------------- 445
            ..|||...||:...|....|::...|...| .:|........|.|.:|.:               
Mouse   613 ISPRSLSGRIVGGVWWFFTLIIISSYTANL-AAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGS 676

  Fly   446 ------RSNYTLINQEYLDYYPRELTVLTRNGSKDRFDYIQGLGK----EGKFTTTSLIATMEYY 500
                  ||...:..:.:......|.:|.||..:       :|:.:    :|||... |.:||..|
Mouse   677 TKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTA-------EGVARVRKSKGKFAFL-LESTMNEY 733

  Fly   501 NMMHWSTSRLTHIKEHIFLYQMVIYLRRHSLLKFAFDRKIKQLLSAGIIGYFVREF----DACQY 561
            .........: .:..::......:...:.|.|:...:..:.:|..||::.....::    ..|..
Mouse   734 IEQRKPCDTM-KVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKGECGP 797

  Fly   562 RKPFEEDYEVTPIPLDSFCGLYYISLIWLSAAVVAFILE 600
            :....:| :.:.:.|.:..|::||.:..|..|::..::|
Mouse   798 KDSGSKD-KTSALSLSNVAGVFYILVGGLGLAMLVALIE 835

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir7aNP_572406.1 None
Gria4XP_006509904.1 PBP1_iGluR_AMPA_GluR4 28..400 CDD:380611
PBP2_iGluR_AMPA_GluR4 414..795 CDD:270445 49/321 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.