DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab39 and CG15399

DIOPT Version :9

Sequence 1:NP_001245568.1 Gene:Rab39 / 31684 FlyBaseID:FBgn0029959 Length:218 Species:Drosophila melanogaster
Sequence 2:NP_608712.1 Gene:CG15399 / 33472 FlyBaseID:FBgn0031460 Length:242 Species:Drosophila melanogaster


Alignment Length:179 Identity:36/179 - (20%)
Similarity:61/179 - (34%) Gaps:75/179 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 RLILIGDSTVGKSSLLKFF------------TDG--------KFAELSDP--------------- 40
            |::::||..|||:||....            |.|        :..|.|.|               
  Fly    13 RILMLGDRGVGKTSLTNLMATTEITPTPDSRTVGEESWHVQVRLHEYSKPVILPPTPTWTTPSSS 77

  Fly    41 --------------TVGVDFFARLIEMKDGTQIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYD 91
                          |..:.:|....::...       |....|:|     :|:|:|..|::|||:
  Fly    78 EDSENYPYMRSTPTTTNILYFVEFYDLNSD-------WRMCRQQR-----ESFYKNIDGIVLVYN 130

  Fly    92 ISNHASFEHIPLWMMEAQRHIEPHR-------------PVFALVGCKLD 127
            :...:|.:.:..|:.:..|.|..||             |:. :||..||
  Fly   131 MLELSSQDSLHDWLYDPLRQICKHRHLRIRSILKNHNAPIL-VVGTNLD 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab39NP_001245568.1 Rab39 8..218 CDD:133311 36/179 (20%)
CG15399NP_608712.1 P-loop_NTPase 12..229 CDD:304359 36/179 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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