DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab39 and Rab9Db

DIOPT Version :9

Sequence 1:NP_001245568.1 Gene:Rab39 / 31684 FlyBaseID:FBgn0029959 Length:218 Species:Drosophila melanogaster
Sequence 2:NP_572642.1 Gene:Rab9Db / 31993 FlyBaseID:FBgn0030221 Length:197 Species:Drosophila melanogaster


Alignment Length:172 Identity:64/172 - (37%)
Similarity:102/172 - (59%) Gaps:5/172 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 FEYQFRLILIGDSTVGKSSLLKFFTDGKFAELSDPTVGVDFFARLIEMKDGTQIK-LQLWDTAGQ 69
            ::..|::|::|||.|||:.||..|:|.:|.|....|||:|.....:|..|....: ||:|||:..
  Fly     4 YDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVEFADWRMGRMLQVWDTSDD 68

  Fly    70 ERFRSITKSYYRNSVGVLLVYDISNHASFEHIPLWMMEAQRHIEPHRPVFALVGCKLDLINAGGH 134
            |||:.:..:..|::.|:||||||::..||::|..||.|.:| :.|.:....|||.|.|..|   |
  Fly    69 ERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRR-LCPDKVTVLLVGNKSDDPN---H 129

  Fly   135 REVTTEEAQKFAKQHGLHFVETSARSGANVEEAFRMVTQEVY 176
            |:|:..:...:|.:..:.|.|.||:||.||.:.|..:..::|
  Fly   130 RQVSMAQGFNYAHRQSICFEEVSAKSGRNVYDIFSSLAMDIY 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab39NP_001245568.1 Rab39 8..218 CDD:133311 64/170 (38%)
Rab9DbNP_572642.1 RAB 8..171 CDD:197555 63/166 (38%)
Rab 8..167 CDD:206640 63/162 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454320
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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