DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab39 and LOC100330257

DIOPT Version :9

Sequence 1:NP_001245568.1 Gene:Rab39 / 31684 FlyBaseID:FBgn0029959 Length:218 Species:Drosophila melanogaster
Sequence 2:XP_002665171.1 Gene:LOC100330257 / 100330257 -ID:- Length:212 Species:Danio rerio


Alignment Length:218 Identity:89/218 - (40%)
Similarity:126/218 - (57%) Gaps:10/218 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 VEPIFEYQFRLILIGDSTVGKSSLLKFFTDGKFAELSDPTVGVDFFARLIEMKDGTQIKLQLWDT 66
            :|..:.::|.::::|||.|||||||..||:|.|.|.....:|:||....::::....|||.||||
Zfish     1 MEVPWNFRFGIVILGDSFVGKSSLLHRFTEGTFEEARQSPLGIDFKVHNMKIEPNVLIKLLLWDT 65

  Fly    67 AGQERFRSITKSYYRNSVGVLLVYDISNHASFEHIPLWMMEAQRHIEPHRPVFALVGCKLDLINA 131
            |||||||||.|||.|||||.:|::|:|...||||:.||..|...:::|:..:|.||..|.||...
Zfish    66 AGQERFRSICKSYMRNSVGCILMFDVSQRKSFEHVSLWHQEVLDYVKPNPMIFLLVAHKSDLAVC 130

  Fly   132 GGHREVTTEEAQKFA-KQHGLHFVETSARSGANVEEAFRMVTQEVYARIRSGEYKAEDGWDGIKS 195
               |||...|.:..| |.:.|.::|.|.:...||.|||..:|..:|.:.:.||....|.|.|:..
Zfish   131 ---REVRKSEGEALAEKLNMLAYLEVSTKDYINVSEAFETLTTGIYQQFQKGEISVRDDWHGLTV 192

  Fly   196 GFSRPNSLDFNLVVAEPEKSSCC 218
            |.|..|.....      :||:||
Zfish   193 GTSVKNEKTVT------KKSACC 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab39NP_001245568.1 Rab39 8..218 CDD:133311 86/210 (41%)
LOC100330257XP_002665171.1 P-loop_NTPase 7..211 CDD:328724 88/212 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1416096at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR47979
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.020

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