DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdp and pdp1

DIOPT Version :9

Sequence 1:NP_001245567.1 Gene:Pdp / 31683 FlyBaseID:FBgn0029958 Length:475 Species:Drosophila melanogaster
Sequence 2:XP_012820338.1 Gene:pdp1 / 779724 XenbaseID:XB-GENE-481257 Length:561 Species:Xenopus tropicalis


Alignment Length:463 Identity:180/463 - (38%)
Similarity:271/463 - (58%) Gaps:44/463 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 PQLPQLSPYDVNLVLRENEFVYNFP-VDG----VIRSYETNQLGSNWPCEDSRTEASFLHRNGFI 88
            ||...|:|..||.:|:.||:.:..| .||    .|..:::|||.:|.|.||.|:.|:.|...|.:
 Frog   104 PQRFYLTPPQVNSILKANEYSFKVPEFDGKNISSILGFDSNQLPANAPIEDRRSAATCLQSRGML 168

  Fly    89 CGIFDGHAGAACGQVVSKRLLRYVSAATLPRQVLRE---QMKQGADSQSFLKCHNDNVDFVSM-I 149
            .|:||||||.||.|.||:||..|::.:.||::.|.|   .::.|......|:.|....|:.|. .
 Frog   169 LGVFDGHAGCACAQAVSERLFYYIAVSLLPQETLLEIENAVESGRALLPILQWHKHPNDYFSKEA 233

  Fly   150 KPMYEASFLKYVNQLLET---PQRDVSSELVNAFLQLDEEISQEALTSNDVRTMN-----VALSG 206
            ..:|..|...|..:|::.   ...||...|:|:|.:||.::|.||...:....:|     ||.||
 Frog   234 SKLYFNSLRTYWQELIDLNTGETTDVKEALINSFKRLDNDLSLEAQVGDPNSFLNYWVLRVAFSG 298

  Fly   207 AVACLVHIEGLQMHVASTGDCGAVLGVLDPQTQQWHSKKLNIEHNADNMSEVRRILAEHPKEEHE 271
            |.||:.|::|:.:|||:|||..|:|||.: :...|.:..::.:|||.|.|||.|:.:|||||. :
 Frog   299 ATACVAHVDGVDLHVANTGDSRALLGVQE-EDGSWSAVTMSHDHNAQNDSEVLRLKSEHPKEV-K 361

  Fly   272 TVIRNGRLLSQLAPLRAFGDFRYKWSQEIMQQ---------------KVLPMFGVQAMAPNYYTP 321
            :|::..|||..|.|.|||||.::|||.::.::               |.:|        |||:||
 Frog   362 SVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVVESGPDQLNDNEYTKFIP--------PNYHTP 418

  Fly   322 PYLTARPDVQQHELGPNDKFLVIASDGLWDFLPPSEVVSLVGEHINSKKILEPMRLPEGDTTLQE 386
            |||||.|:|..|.|.|.||||::|:||||:.:...:||.:|||::......:|:.:.....||.:
 Frog   419 PYLTAEPEVIYHRLRPKDKFLILATDGLWETMHRQDVVRIVGEYLTGVHHQQPLAVGGYKVTLGQ 483

  Fly   387 ISQQLAERKAGLTRKPVDQNAATHLIRHALGGTDYG-IEHSKISYYLTLPRDAVRLYRDDITITV 450
            :...|.||:|.::....||||||||||||:|..::| ::|.::|..|:||.:..|:|||||||.|
 Frog   484 MQGLLMERRARISSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKMLSLPEELARMYRDDITIIV 548

  Fly   451 IYFNSEHI 458
            :.||| |:
 Frog   549 VQFNS-HV 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdpNP_001245567.1 PP2Cc 58..394 CDD:238083 133/362 (37%)
pdp1XP_012820338.1 PP2Cc 138..551 CDD:238083 164/422 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 168 1.000 Domainoid score I3779
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H31928
Inparanoid 1 1.050 313 1.000 Inparanoid score I2533
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D186269at33208
OrthoFinder 1 1.000 - - FOG0002436
OrthoInspector 1 1.000 - - otm49456
Panther 1 1.100 - - LDO PTHR13832
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4300
SonicParanoid 1 1.000 - - X558
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.190

Return to query results.
Submit another query.