DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12155 and madf-3

DIOPT Version :9

Sequence 1:NP_572403.1 Gene:CG12155 / 31682 FlyBaseID:FBgn0029957 Length:555 Species:Drosophila melanogaster
Sequence 2:NP_494766.1 Gene:madf-3 / 186755 WormBaseID:WBGene00019218 Length:312 Species:Caenorhabditis elegans


Alignment Length:87 Identity:27/87 - (31%)
Similarity:41/87 - (47%) Gaps:5/87 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 LTLINLVRQNPVLYNYKLQPNQRRRSDVLNG-WQEVAQQIGNKYTVQEVRRKWKNLRDTFHQYRL 85
            |.||..||.:..|::.  ...|.|.::..|. ||.:...:|.....:.:..:||.|||.:.:.: 
 Worm     8 LRLIEAVRHSRCLFDN--TDRQYRNTEYKNRVWQRLVTVLGFDGDPRMLSARWKQLRDKYGKEK- 69

  Fly    86 RTPKYIEGRLSKWRYAKELDFL 107
            |..|| ....|.|:|.|.|.||
 Worm    70 RKQKY-GNEKSSWQYFKHLHFL 90

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12155NP_572403.1 MADF 24..112 CDD:214738 26/85 (31%)
madf-3NP_494766.1 MADF 9..94 CDD:214738 26/86 (30%)
MADF 122..212 CDD:214738
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001895
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.