DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hira and AT5G43920

DIOPT Version :9

Sequence 1:NP_572401.2 Gene:Hira / 31680 FlyBaseID:FBgn0022786 Length:1047 Species:Drosophila melanogaster
Sequence 2:NP_199205.1 Gene:AT5G43920 / 834414 AraportID:AT5G43920 Length:523 Species:Arabidopsis thaliana


Alignment Length:384 Identity:79/384 - (20%)
Similarity:131/384 - (34%) Gaps:130/384 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 SVDIHKD-CTKFATGGQGSDCGRVVIWNLLPVLSDKAEFDADVPKMLCQ-MDQHLACVNCVRWSQ 80
            :|.::|| |           |||                 ..:|....| :..|...|..|::|.
plant   198 AVSLYKDHC-----------CGR-----------------DQIPSETVQILVAHKNEVWFVQFSN 234

  Fly    81 NGQNLASGSDDKLIMIWRKSAGSSGVFGTGGMQKNHESWKCFYTLRGHDGDVLDLAWSPNDVYLA 145
            :|:.||:.|.|...:||:       |.....::..|       ||..|...|..::|||:|..|.
plant   235 SGKYLATASSDCTAIIWK-------VLDDNKVELKH-------TLESHQNPVSFVSWSPDDTKLL 285

  Fly   146 SCSIDNTVIIWDAQA---------------------FPHSVATLKGHTGLVKG-VSWD------- 181
            :|.....:.:||...                     ||.|...:.|.:...:| |.||       
plant   286 TCGNAEVLKLWDVDTGVLRHTFGNNNTGFTVSSCAWFPDSTRLVCGSSDPERGIVMWDTDGNEIK 350

  Fly   182 ----------------PLGRFLASQSDDRSIKIWNTMNWSLSHTITEPFEECGGTTHILRLSWSP 230
                            |.|..:.:...|:.|:|.| :...:...|:|       ...|..||.|.
plant   351 AWRGTRIPKVVDLAVTPDGESMITVFSDKEIRILN-LETKVERVISE-------EQPITSLSISG 407

  Fly   231 DGQYLV------SAHAMNGGGPTAQIIEREGWKCDKDFVGHRKAVTCVRFHNSILSRQENDGSPS 289
            ||::.:      ..|..:..|.         ||....|.|||::...:|             |..
plant   408 DGKFFIVNLSCQEIHLWDLAGE---------WKQPLKFSGHRQSKYVIR-------------SCF 450

  Fly   290 KPLQYCCLAVGSRDRSLSVWMTALQRPMVVI--HELFNASILDLTWGPQECLLMACSVD 346
            ..|....:|.||.|..:.:|.....:|:.|:  |.:   ::..::|.|:...::|.:.|
plant   451 GGLDSSFIASGSEDSQVYIWNLKNTKPLEVLSGHSM---TVNCVSWNPKNPRMLASASD 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HiraNP_572401.2 WD40 <12..370 CDD:225201 79/384 (21%)
WD40 14..349 CDD:238121 79/384 (21%)
WD40 repeat 16..68 CDD:293791 9/51 (18%)
WD40 repeat 74..127 CDD:293791 13/52 (25%)
WD40 repeat 132..169 CDD:293791 12/57 (21%)
WD40 repeat 176..211 CDD:293791 10/58 (17%)
WD40 repeat 223..263 CDD:293791 10/45 (22%)
WD40 repeat 275..322 CDD:293791 9/48 (19%)
WD40 repeat 328..350 CDD:293791 4/19 (21%)
HIRA_B 423..442 CDD:286531
Hira 629..820 CDD:284895
AT5G43920NP_199205.1 CTLH 49..104 CDD:128914
WD40 217..513 CDD:238121 71/337 (21%)
WD40 repeat 227..267 CDD:293791 14/53 (26%)
WD40 repeat 273..309 CDD:293791 8/35 (23%)
WD40 repeat 316..353 CDD:293791 8/36 (22%)
WD40 repeat 361..396 CDD:293791 7/35 (20%)
WD40 repeat 400..437 CDD:293791 10/45 (22%)
WD40 repeat 445..482 CDD:293791 10/49 (20%)
WD40 repeat 488..513 CDD:293791 4/19 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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