DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hira and AT5G07590

DIOPT Version :9

Sequence 1:NP_572401.2 Gene:Hira / 31680 FlyBaseID:FBgn0022786 Length:1047 Species:Drosophila melanogaster
Sequence 2:NP_001318500.1 Gene:AT5G07590 / 830652 AraportID:AT5G07590 Length:458 Species:Arabidopsis thaliana


Alignment Length:430 Identity:86/430 - (20%)
Similarity:145/430 - (33%) Gaps:171/430 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 CG-----RVVIWNLLPVLSDKAEFDADVPKMLCQMDQHLACVNCVRWSQNGQNLASGSDDKL-IM 95
            ||     .:..|:|..            |:..|::|:..|.::..|||.:.:::.:.|:.:| :.
plant    64 CGLYKKPMIQAWSLTQ------------PEWTCKIDEGPAGISYARWSPDSRHILTTSEFQLRLT 116

  Fly    96 IWR-----------KSAGSSGV-FGTGGM---------QKNH------ESWKCFYTLRGHDGDVL 133
            :|.           ...||.|| |...|.         .|::      :||:...:......|:.
plant   117 VWSLLNTACVHVQWPKHGSKGVSFNQDGKFAAICTRRDCKDYVNLLSCQSWEIMGSFAVDTLDLA 181

  Fly   134 DLAWSPNDVYLASCSIDNTVIIWDA-------------------QAFPHSVATLKGHTGL-VKGV 178
            ||.|||:         |:::::||:                   ||:         ..|| ||.|
plant   182 DLEWSPD---------DSSIVVWDSPLEYKVLIYSPDGRCLFKYQAY---------ECGLGVKTV 228

  Fly   179 SWDPLGRFLASQSDDRSIKIWNTMNWS-------LSHTITEP-----FEECGGTTHILRLSWSPD 231
            ||.|.|:|||..|.|:.:::.|.:.|.       || |:..|     |:|......:.....|.|
plant   229 SWSPCGQFLAIGSYDQMLRVLNHLTWKTFAEFLHLS-TVRAPCSAAIFKEIDEPLQLDMSELSLD 292

  Fly   232 GQYLVSAHAMNGG-------------------GPTAQIIEREG-----WKCDKDFVGHRKAVTCV 272
            ..::.|.:..:.|                   .|..:...::|     |..|..::       |.
plant   293 ENFMPSNYDASEGYISVRYEVMELPVAFPFQKPPADKPNPKQGVGLLAWSKDSQYI-------CT 350

  Fly   273 RFHNSILSRQENDGSPS-------KPLQYCCLAVGSRDRSLSVWMTALQRPMV------------ 318
            |          ||..|:       :.|:...:.|.......:||.....|.::            
plant   351 R----------NDSMPTALWIWDMRLLEVAAILVQKEPIRAAVWDPTCTRLLLCTGSSHLYMWTP 405

  Fly   319 -----VIHELFNASILDLTWGPQECLLMACSVDGSIACLK 353
                 |.:.|...||.||.|          ::|||...||
plant   406 SGAFCVCNPLPGFSISDLKW----------NIDGSCLLLK 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HiraNP_572401.2 WD40 <12..370 CDD:225201 86/430 (20%)
WD40 14..349 CDD:238121 83/424 (20%)
WD40 repeat 16..68 CDD:293791 6/35 (17%)
WD40 repeat 74..127 CDD:293791 15/80 (19%)
WD40 repeat 132..169 CDD:293791 10/55 (18%)
WD40 repeat 176..211 CDD:293791 16/41 (39%)
WD40 repeat 223..263 CDD:293791 8/63 (13%)
WD40 repeat 275..322 CDD:293791 9/70 (13%)
WD40 repeat 328..350 CDD:293791 7/21 (33%)
HIRA_B 423..442 CDD:286531
Hira 629..820 CDD:284895
AT5G07590NP_001318500.1 WD40 <13..268 CDD:225201 53/234 (23%)
WD40 repeat 51..90 CDD:293791 7/37 (19%)
WD40 repeat 93..130 CDD:293791 6/36 (17%)
WD40 repeat 138..179 CDD:293791 6/40 (15%)
WD40 183..>412 CDD:421866 49/264 (19%)
WD40 repeat 225..267 CDD:293791 17/42 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.