DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hira and AGB1

DIOPT Version :9

Sequence 1:NP_572401.2 Gene:Hira / 31680 FlyBaseID:FBgn0022786 Length:1047 Species:Drosophila melanogaster
Sequence 2:NP_195172.1 Gene:AGB1 / 829597 AraportID:AT4G34460 Length:377 Species:Arabidopsis thaliana


Alignment Length:347 Identity:79/347 - (22%)
Similarity:134/347 - (38%) Gaps:97/347 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 QIFSVDIHKDCTKFATGGQGSDCGRVVIWNLLP-------------------------------- 47
            :::|:|...:..:..:..|.   ||:::||.|.                                
plant    67 KVYSLDWTPERNRIVSASQD---GRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQSVACGGLD 128

  Fly    48 ------VLSDKAEFDADVP--KMLCQMDQHLACVNCVRWSQN-GQNLASGSDDKLIMIWRKSAG- 102
                  .||..|:.|..||  :||   ..|...|:|.::..| ..:|.:.|.|:..::|..:.| 
plant   129 SVCSIFSLSSTADKDGTVPVSRML---TGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVTTGL 190

  Fly   103 SSGVFGTGGMQKNHESWKCFYTLRGHDGDVLDLAWS---PNDVYLASCSIDNTVIIWDAQAFPHS 164
            .:.||| |..|.            ||..|||.::.|   ||  :..|.|.|:|..:||.:|...:
plant   191 KTSVFG-GEFQS------------GHTADVLSVSISGSNPN--WFISGSCDSTARLWDTRAASRA 240

  Fly   165 VATLKGHTGLVKGVSWDPLGRFLASQSDDRSIKIWNTMNWSLSH--TITEPFEECGGTTHILRLS 227
            |.|..||.|.|..|.:.|.|....:.|||.:.::::...   .|  .:.:|..: |....:..::
plant   241 VRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRT---GHQLQVYQPHGD-GENGPVTSIA 301

  Fly   228 WSPDGQYLVSAHAMNG-----GGPTAQIIEREGWKCDKDFVGHRKAVTCVRFHNSILSRQENDGS 287
            :|..|:.|.:.:|.|.     .....:::...|.:.|    .||..::|:..        ..|||
plant   302 FSVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQD----SHRNRISCLGL--------SADGS 354

  Fly   288 PSKPLQYCCLAVGSRDRSLSVW 309
                    .|..||.|.:|.:|
plant   355 --------ALCTGSWDSNLKIW 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HiraNP_572401.2 WD40 <12..370 CDD:225201 79/347 (23%)
WD40 14..349 CDD:238121 79/347 (23%)
WD40 repeat 16..68 CDD:293791 16/91 (18%)
WD40 repeat 74..127 CDD:293791 12/54 (22%)
WD40 repeat 132..169 CDD:293791 14/39 (36%)
WD40 repeat 176..211 CDD:293791 7/36 (19%)
WD40 repeat 223..263 CDD:293791 7/44 (16%)
WD40 repeat 275..322 CDD:293791 9/35 (26%)
WD40 repeat 328..350 CDD:293791
HIRA_B 423..442 CDD:286531
Hira 629..820 CDD:284895
AGB1NP_195172.1 WD40 57..369 CDD:238121 79/347 (23%)
WD40 repeat 68..105 CDD:293791 8/39 (21%)
WD40 repeat 111..154 CDD:293791 8/45 (18%)
WD40 repeat 159..196 CDD:293791 9/36 (25%)
WD40 repeat 208..245 CDD:293791 13/38 (34%)
WD40 repeat 251..289 CDD:293791 8/40 (20%)
WD40 repeat 297..338 CDD:293791 6/40 (15%)
WD40 repeat 344..368 CDD:293791 9/39 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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