DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hira and AT2G20330

DIOPT Version :9

Sequence 1:NP_572401.2 Gene:Hira / 31680 FlyBaseID:FBgn0022786 Length:1047 Species:Drosophila melanogaster
Sequence 2:NP_179623.1 Gene:AT2G20330 / 816552 AraportID:AT2G20330 Length:648 Species:Arabidopsis thaliana


Alignment Length:455 Identity:91/455 - (20%)
Similarity:155/455 - (34%) Gaps:130/455 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 QMDQHLACVNCVRWSQNGQNLASGSDDKLIMIWRKSAGSSGVFGTGGMQKNHESWKCFYTLRGHD 129
            |:..|...|:.:.....|..:.|||.|..:.          ::...||....:|::......|| 
plant   172 QLKGHTKIVSSLAVDSAGARVLSGSYDYTVR----------MYDFQGMNSRLQSFRQIEPSEGH- 225

  Fly   130 GDVLDLAWSPNDVYLASCSIDNTVIIWD-----------AQAFPHSVATLKGH-TGLVKGVSWDP 182
             .|..::|||........:......|:|           ...:...:...||| .||..| .|.|
plant   226 -QVRSVSWSPTSGQFLCVTGSAQAKIFDRDGLTLGEFMKGDMYIRDLKNTKGHICGLTCG-EWHP 288

  Fly   183 LGR-FLASQSDDRSIKIWNTMNWSLSHTITEPFEECGGTTHILRLSWSPDGQYLVSAHAMNGGGP 246
            ..: .:.:.|:|.|::||:..|:.....:.:|.....|...:...:|..||:.:    |...|..
plant   289 RTKETVLTSSEDGSLRIWDVNNFLSQTQVIKPKLARPGRVPVTTCAWDRDGKRI----AGGVGDG 349

  Fly   247 TAQIIE-REGWKCDKD-FVG--HRKAVTCVRFHNS---ILSRQENDGSPSKPLQYCCLAVGSRDR 304
            :.||.. :.||....| :||  |...:|.|:|.:.   :|||                   |.|.
plant   350 SIQIWSLKPGWGSRPDIYVGKAHTDDITSVKFSSDGRILLSR-------------------SFDG 395

  Fly   305 SLSVW-MTALQRPMVVIHELFN-ASILDLTWGPQE-CLLMACSVD-----GSIACLKFTEEELGK 361
            ||.|| :..::..:.|...|.| ....::.:.|.| .:|...||:     |.:.|          
plant   396 SLKVWDLRQMKEALKVFEGLPNYYPQTNVAFSPDEQIILTGTSVEKDSTTGGLLC---------- 450

  Fly   362 AISEEEQNAIIRKMYGKNYVNGLGKSAPVLE---HPQ--RLLLPQGDK----------------- 404
             ..:..:..|::|:       |:..::.|::   ||:  ::....|||                 
plant   451 -FYDRTKLEIVQKV-------GISPTSSVVQCAWHPRLNQIFATSGDKSQGGTHILYDPSQSERG 507

  Fly   405 -------------------------PTKFPLSNNNEANQRPISKQTETRTKDGKRRITPMFIPLH 444
                                     |...||..:..:.:|...|..:...|..|..| ||..|.|
plant   508 ACVCVARAPRKKSVDDYQPEPVIHNPHALPLFRDAPSRKREREKALKDPMKSHKPEI-PMTGPGH 571

  Fly   445  444
            plant   572  571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HiraNP_572401.2 WD40 <12..370 CDD:225201 70/332 (21%)
WD40 14..349 CDD:238121 69/311 (22%)
WD40 repeat 16..68 CDD:293791 1/2 (50%)
WD40 repeat 74..127 CDD:293791 8/52 (15%)
WD40 repeat 132..169 CDD:293791 6/47 (13%)
WD40 repeat 176..211 CDD:293791 9/35 (26%)
WD40 repeat 223..263 CDD:293791 10/41 (24%)
WD40 repeat 275..322 CDD:293791 10/50 (20%)
WD40 repeat 328..350 CDD:293791 6/27 (22%)
HIRA_B 423..442 CDD:286531 6/18 (33%)
Hira 629..820 CDD:284895
AT2G20330NP_179623.1 WD40 172..491 CDD:238121 78/372 (21%)
WD40 repeat 180..222 CDD:293791 9/51 (18%)
WD40 repeat 228..273 CDD:293791 5/44 (11%)
WD40 repeat 278..317 CDD:293791 11/39 (28%)
WD40 repeat 331..369 CDD:293791 10/41 (24%)
WD40 repeat 376..413 CDD:293791 13/55 (24%)
WD40 repeat 421..464 CDD:293791 9/60 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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