DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hira and wdr48

DIOPT Version :9

Sequence 1:NP_572401.2 Gene:Hira / 31680 FlyBaseID:FBgn0022786 Length:1047 Species:Drosophila melanogaster
Sequence 2:NP_001072858.1 Gene:wdr48 / 780319 XenbaseID:XB-GENE-976371 Length:678 Species:Xenopus tropicalis


Alignment Length:648 Identity:115/648 - (17%)
Similarity:237/648 - (36%) Gaps:173/648 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 RLLKPAWVHHDDKQ------IFSVDIHKDCTKFATGGQGSDCGRVVIWNLLPVLSDKAEFDADVP 60
            |.::.::|..|:.:      :.::.:.....:..|.|:.|   .:.|||:.....|         
 Frog    13 RKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDS---IIRIWNVNQHKQD--------- 65

  Fly    61 KMLCQMDQHLACVNCVRWSQNGQNLASGSDDKLIMIWRKSAGSSGVFGTGGMQKNHESWKCFYTL 125
            ..:..|:.|...||.:....||:.|.|.|.|..:.:|....|.                 |..||
 Frog    66 PYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGF-----------------CMSTL 113

  Fly   126 RGHDGDVLDLAWSPNDVYLASCSIDNTVIIWDAQ------AFPHSVAT--LKGHTGLVKGVSWDP 182
            |.|...|..||::.:...:||..:|..:.:||..      |..::|.|  |.|:...:..::.:.
 Frog   114 RTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQ 178

  Fly   183 LGRFLASQSDDRSIKIWNTMNWSLSHTITEPFEECGGTTHILRLSWSPDGQYLVSAHAMNGGGPT 247
            :|..:.|.|.::.:::|:      ..|..:..:..|.|.::..|..:.||...:|. :.:|   |
 Frog   179 MGTVIVSGSTEKVLRVWD------PRTCQKLMKLKGHTDNVKALLLNRDGTQCLSG-SSDG---T 233

  Fly   248 AQIIEREGWKCDKDFVGHRKAVTCVRFHN-SILSRQENDGSPSKPLQYCCLAVGSRDRSLSVWMT 311
            .::     |.     :|.::.:...|.|: .:.:.|.|:|       :..:..|.|||  .::.|
 Frog   234 IRL-----WS-----LGQQRCIATYRVHDEGVWALQVNEG-------FTHVYSGGRDR--KIYCT 279

  Fly   312 ALQRP---MVVIHELFNASILDLTWGPQECLLMACSVDGSIACLKFTEEELGKAISEEEQNAIIR 373
            .|:.|   :::..|  .|.:|.:.        :..|.|..:|....|.:   .::::.....|:.
 Frog   280 DLRNPDIRLLICEE--KAPVLKME--------LDRSADPPLALWVATTK---SSVNKWPIKGILN 331

  Fly   374 KMYGKNYVNGLGKS-APVLEHPQRLLLPQG-----------DKPTKFPLSNNNEANQRPISKQTE 426
            .....:|.|..... :|:...|.:::  :|           ||........||......:.|..:
 Frog   332 FRSSGDYENDCSTPLSPICSQPDQVI--KGGASIIQCNILNDKRHILTKDTNNNVAYWDVLKACK 394

  Fly   427 TR-------TKDGKRRITPMFIPLHEDGPTSLSMNIVSSSGSSTTALTSCSAA-IGTLPAAAPTE 483
            ..       .::.|:|...:::      |...|:::.:...:.|...:.|.|| :....|...:.
 Frog   395 VEDLGKVDFEEEIKKRFKMVYV------PNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSP 453

  Fly   484 SAATPLMPLEPLVSKIDLG--RLDSRLKTQPASQRRQSLPFDPGQSNELLRTPRLEEHQSSTCSP 546
            ..:.|         |::||  .|.:.|:..|.:.      .:|           :||.:      
 Frog   454 DGSDP---------KLNLGGLLLQALLEFWPRTH------INP-----------MEEEE------ 486

  Fly   547 SNLNVTATGKSEFVKAALDYRLHVSNGHL---------------KTQHGMLAKVTASDSKEML 594
            :.:|..|.|:.|       .|:...||:.               :|...:|.:.:..:::.||
 Frog   487 NEVNHVANGEQE-------NRIQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESML 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HiraNP_572401.2 WD40 <12..370 CDD:225201 72/375 (19%)
WD40 14..349 CDD:238121 69/352 (20%)
WD40 repeat 16..68 CDD:293791 8/51 (16%)
WD40 repeat 74..127 CDD:293791 12/52 (23%)
WD40 repeat 132..169 CDD:293791 11/44 (25%)
WD40 repeat 176..211 CDD:293791 5/34 (15%)
WD40 repeat 223..263 CDD:293791 7/39 (18%)
WD40 repeat 275..322 CDD:293791 11/50 (22%)
WD40 repeat 328..350 CDD:293791 3/21 (14%)
HIRA_B 423..442 CDD:286531 3/25 (12%)
Hira 629..820 CDD:284895
wdr48NP_001072858.1 WD 1 28..67 7/50 (14%)
WD40 30..300 CDD:238121 67/329 (20%)
WD40 repeat 35..73 CDD:293791 8/49 (16%)
WD 2 73..112 12/55 (22%)
WD40 repeat 79..115 CDD:293791 12/52 (23%)
WD 3 115..154 9/38 (24%)
WD40 repeat 120..160 CDD:293791 9/39 (23%)
WD 4 166..205 6/44 (14%)
WD40 repeat 172..207 CDD:293791 5/40 (13%)
WD 5 208..247 10/52 (19%)
WD40 repeat 213..249 CDD:293791 8/49 (16%)
WD 6 250..289 11/47 (23%)
WD40 repeat 255..281 CDD:293791 8/34 (24%)
WD 7 292..334 8/54 (15%)
WD 8 358..397 6/38 (16%)
DUF3337 510..674 CDD:371741 4/33 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 608..629
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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