DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hira and wdr26

DIOPT Version :9

Sequence 1:NP_572401.2 Gene:Hira / 31680 FlyBaseID:FBgn0022786 Length:1047 Species:Drosophila melanogaster
Sequence 2:XP_031757615.1 Gene:wdr26 / 733878 XenbaseID:XB-GENE-993726 Length:616 Species:Xenopus tropicalis


Alignment Length:334 Identity:75/334 - (22%)
Similarity:115/334 - (34%) Gaps:96/334 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 MDQHLACVNCVRWSQNGQNLASGSDDKLIMIWRKSAGSSGVFGTGGMQKNHESWKCFYTLRGHDG 130
            :.:|...|...::|.:|..||:||.|..::||:             :..:....|...||.||..
 Frog   306 LTEHCNEVWFCKFSNDGTKLATGSKDTTVIIWQ-------------VDPDTHQLKLLKTLEGHAY 357

  Fly   131 DVLDLAWSPNDVYLASCSID--NTVIIWDAQAFPHSVATLKGHTGLVKGVSWDP----------L 183
            .|..|||||:|.||.:|..|  :.:.:|:.|.........:.|...:..|:|:|          .
 Frog   358 GVSYLAWSPDDNYLIACGPDDCSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQR 422

  Fly   184 GRFLASQSDDRSIKIWNTMN----WSLSHTITEPFEECGGTTH---------------------- 222
            |:|.....|...:..|..:.    |.||...|    .....||                      
 Frog   423 GQFYQCDLDGNLLDSWEGVRVQCLWCLSDGKT----VLASDTHQRIRGYNFEDLTDRNIVQEDHP 483

  Fly   223 ILRLSWSPDGQYLVSAHAMNGGGPTAQIIEREGWKC-DKDFVGHRKAVT--------CVRFHNSI 278
            |:..:.|.:|:..:...|..|         ...|.. |:..|...:.||        |...||..
 Frog   484 IMSFTISRNGRLALLNVATQG---------VHLWDLQDRVLVRKYQGVTQGFYTIHSCFGGHNED 539

  Fly   279 LSRQENDGSPSKPLQYCCLAVGSRDRSLSVWMTALQRPMVVIHEL--FNASILDLTWGPQECLLM 341
            .                 :|.||.|..:.||....:.|   |.||  ...::..::|.||...||
 Frog   540 F-----------------IASGSEDHKVYVWHKRSELP---IAELTGHTRTVNCVSWNPQIPSLM 584

  Fly   342 A-CSVDGSI 349
            | .|.||::
 Frog   585 ASASDDGTV 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HiraNP_572401.2 WD40 <12..370 CDD:225201 75/334 (22%)
WD40 14..349 CDD:238121 75/332 (23%)
WD40 repeat 16..68 CDD:293791 0/1 (0%)
WD40 repeat 74..127 CDD:293791 12/52 (23%)
WD40 repeat 132..169 CDD:293791 13/38 (34%)
WD40 repeat 176..211 CDD:293791 10/48 (21%)
WD40 repeat 223..263 CDD:293791 7/40 (18%)
WD40 repeat 275..322 CDD:293791 10/46 (22%)
WD40 repeat 328..350 CDD:293791 9/23 (39%)
HIRA_B 423..442 CDD:286531
Hira 629..820 CDD:284895
wdr26XP_031757615.1 LisH_TPL 72..99 CDD:375350
WD40 304..596 CDD:238121 75/334 (22%)
WD40 repeat 313..354 CDD:293791 13/53 (25%)
WD40 repeat 360..399 CDD:293791 12/38 (32%)
WD40 repeat 404..439 CDD:293791 6/34 (18%)
WD40 repeat 484..520 CDD:293791 8/44 (18%)
WD40 repeat 529..565 CDD:293791 12/55 (22%)
WD40 repeat 571..596 CDD:293791 9/23 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.