DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hira and poc1b

DIOPT Version :9

Sequence 1:NP_572401.2 Gene:Hira / 31680 FlyBaseID:FBgn0022786 Length:1047 Species:Drosophila melanogaster
Sequence 2:XP_012814294.1 Gene:poc1b / 448445 XenbaseID:XB-GENE-944930 Length:470 Species:Xenopus tropicalis


Alignment Length:497 Identity:113/497 - (22%)
Similarity:187/497 - (37%) Gaps:94/497 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 HLACVNCVRWSQNGQNLASGSDDKLIMIWRKSAGSSGVFGTGGMQKNHESWKCFYTLRGHDGDVL 133
            |...|..|.:|.:|:.|||.|.|..:|||                 |.:.....|...||...|.
 Frog    17 HKDAVTYVDFSPDGKQLASSSADACVMIW-----------------NFKPQSRAYKYPGHKEAVT 64

  Fly   134 DLAWSPNDVYLASCSIDNTVIIWDAQAFPHSVATLKGHTGLVKGVSWDPLGRFLASQSDDRSIKI 198
            .:.:||:...:||.|.|.||.:| |.......:.||.||.:|:.|::...|....:.|||:|||.
 Frog    65 CVQFSPSGHLVASSSKDRTVRLW-APNIKGESSVLKAHTAVVRCVNFSSDGHTFITASDDKSIKA 128

  Fly   199 WNTMNWSLSHTITEPFEECGGTTHILRLSWSPDGQYLVSAHAMNGGGPTAQIIEREGWKCDKDFV 263
            ||.......:::||      .|..:....:||||:.:.|.    ....|.:|.:.....|...||
 Frog   129 WNLHRQRFLYSLTE------HTNWVRCARFSPDGRLIASC----SDDKTVRIWDITNRLCINTFV 183

  Fly   264 GHRKAVTCVRFHNSILSRQENDGSPSKPLQYCCLAVGSRDRSLSVWMTALQRPMVVIHELFNASI 328
            .::.....|.|:               |:..|..:.|. |.::.||.....: ::..:::.||.:
 Frog   184 DYKGHSNYVDFN---------------PMGTCVASAGV-DSTVKVWDIRTNK-LLQHYQVHNAGV 231

  Fly   329 LDLTWGPQECLLMACSVDGSIACLKFTEEELGKAISEEEQNAIIRKMYGKN---YVNGLGKSAPV 390
            ..|::.|....|:..|.||::..|...|..|...: ...|..::...:.|:   :.:| ...|.|
 Frog   232 NSLSFHPSGNYLLTASNDGTVKILDLLEGRLIYTL-HGHQGPVLSVAFSKSGDQFASG-ATDAQV 294

  Fly   391 LEHPQRLLLPQGDKPTKFPLSNNNEANQRPISKQTETRT--------KDGKRRITPMFIPLHEDG 447
            |...                :|.::.|.:.|.|..:.||        .|    |.|....||...
 Frog   295 LVWK----------------TNFDKYNIKEIVKLQQKRTCPEAPPHLND----IYPKTPHLHTSS 339

  Fly   448 PTSLSMNIVSSSGSSTT----------ALTSC--SAAIGTLPAAAPTESAATPLMPLEPLVSKID 500
            ..|:.:|.:.....:.|          ....|  :.|:.||......::...  .|:.||.|.::
 Frog   340 GHSIEINPMFELADTQTFDPPIIDVGANFPYCRQTKALHTLNKYERNDNVCN--YPMPPLASSVE 402

  Fly   501 LGRLDSRLKTQPASQRRQSLPFDP--GQSNELLRTPRLEEHQ 540
            ..:....:..|.|..|..|...:.  .|.|.|.:|..:.||:
 Frog   403 GQKEHPLVGVQGALPRSLSNTLEQIVDQLNVLTQTVSILEHR 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HiraNP_572401.2 WD40 <12..370 CDD:225201 76/300 (25%)
WD40 14..349 CDD:238121 72/279 (26%)
WD40 repeat 16..68 CDD:293791
WD40 repeat 74..127 CDD:293791 13/52 (25%)
WD40 repeat 132..169 CDD:293791 11/36 (31%)
WD40 repeat 176..211 CDD:293791 10/34 (29%)
WD40 repeat 223..263 CDD:293791 8/39 (21%)
WD40 repeat 275..322 CDD:293791 6/46 (13%)
WD40 repeat 328..350 CDD:293791 6/21 (29%)
HIRA_B 423..442 CDD:286531 6/26 (23%)
Hira 629..820 CDD:284895
poc1bXP_012814294.1 WD40 12..298 CDD:238121 81/327 (25%)
WD40 repeat 21..58 CDD:293791 14/53 (26%)
WD40 repeat 64..100 CDD:293791 11/36 (31%)
WD40 repeat 105..141 CDD:293791 11/35 (31%)
WD40 repeat 148..183 CDD:293791 8/38 (21%)
WD40 repeat 190..225 CDD:293791 8/51 (16%)
WD40 repeat 231..267 CDD:293791 9/36 (25%)
WD40 repeat 273..297 CDD:293791 5/24 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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