DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hira and BRWD3

DIOPT Version :9

Sequence 1:NP_572401.2 Gene:Hira / 31680 FlyBaseID:FBgn0022786 Length:1047 Species:Drosophila melanogaster
Sequence 2:NP_732982.1 Gene:BRWD3 / 42898 FlyBaseID:FBgn0011785 Length:2232 Species:Drosophila melanogaster


Alignment Length:612 Identity:123/612 - (20%)
Similarity:213/612 - (34%) Gaps:187/612 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 KMLCQMDQHLACVNCVRWSQNGQNLASGSDDKLIMIWRKSAGSSGVFGTGGMQKNHESWKCFYTL 125
            |:|.:...||:.|.||.:.:.|:.:.:|:||.||.||..:.|                 :...||
  Fly   174 KLLRRTVGHLSSVYCVLFDRTGRYIITGADDLLIKIWSAADG-----------------RLLATL 221

  Fly   126 RGHDGDVLDLAWSPNDVYLASCSIDNTVIIWDAQAFPHSVATLKGHTGLVKGVSWDPLGR----F 186
            ||...::.|:|.:.::..||:.|:|:.:.:||.|. ...:|.|..|||::..|::.|..|    :
  Fly   222 RGASSEITDIAINLDNTMLAAGSLDHILRVWDMQT-TSPIAVLSAHTGMITSVNFCPSPRSDLKY 285

  Fly   187 LASQSDDRSIKIW-----NTMNWSLSHTITEPFEEC-GGTTHILRLSWSPDGQYL--------VS 237
            |.:.|.|.||..|     .....:.:...|:..|:. .|...::..::||.|.:|        |.
  Fly   286 LVTTSTDGSIAFWQYSTPRGQKITFAPKPTQYHEKLRPGQAQMMCTTFSPGGIFLAAGSADHHVR 350

  Fly   238 AHAMNGGGP--------------------------------TAQI--IEREGWK----------- 257
            .:.|...||                                ||.|  .|.:.||           
  Fly   351 VYMMGEDGPKRILETEAYTDAVDSVQWSHRGLRFISGSKDGTAHIWTFESQQWKSSKLCMTERLA 415

  Fly   258 -CDKDFVGHRKAVTCVRFHNSILSRQENDGSPSKPLQYCCLAVGSRDRSLSVWMTALQRPMVVIH 321
             |.:...|.|..||.|.:          |.|.    :|...||  .|.::.:|.:...:    :|
  Fly   416 SCPEPEEGKRLKVTMVAW----------DASD----RYVITAV--NDFTIKIWDSKSAK----LH 460

  Fly   322 ELFNA---SILDLTWGPQ-ECLLMACSVDGSIACLKFTEEELGKAISEEEQNAIIRKMYGKNYVN 382
            .:...   .:..|...|: |.:|::...||.:            .:.:.||...:....  |.::
  Fly   461 RVLRGHKDELYVLESNPRDEHVLLSAGHDGQV------------FLWDIEQGVCVANFL--NDID 511

  Fly   383 GLGKS--------------APVLEHPQRLLLPQG---DKPTKFPLSNNNEANQRPISKQTETRTK 430
            |.|..              |....|...|:...|   :|....|.......:.||:.:..:....
  Fly   512 GQGHGSVFDAKWSPDGTMIAATDSHGHILIFGLGVCIEKYKMLPTELFFHTDFRPLLRDAQHHVV 576

  Fly   431 DGKRRITPMFIP----LHEDG---PT----------SLSMN-------------IVSSSGSSTTA 465
            |.:.:|.|..:|    :..||   |:          |.|::             ::...|:...|
  Fly   577 DEQTQIMPHLMPPPFLVDADGNPHPSRFQRFVPGRESCSLDQLIPNLTVGVDGVVIDDGGAGGDA 641

  Fly   466 LTSCSAAIGTLPAAAPTESAATPLMPLEPLVSKIDLGRLDSRLKTQPASQRRQSL--------PF 522
            :.:.:.|... |||.|..:|..|        ...:...:|..:   .|...|||:        |.
  Fly   642 VVAAAPAEAP-PAALPPAAAGGP--------QGANYSHIDRMI---AALANRQSVNVNANDANPT 694

  Fly   523 DPGQSNELLRTPRLEEHQSSTCSPSNL 549
            :..||.|.|...::.:......|..|:
  Fly   695 NGNQSFERLTNRQMPDSNGRQSSRGNV 721

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HiraNP_572401.2 WD40 <12..370 CDD:225201 82/376 (22%)
WD40 14..349 CDD:238121 80/355 (23%)
WD40 repeat 16..68 CDD:293791 2/6 (33%)
WD40 repeat 74..127 CDD:293791 13/52 (25%)
WD40 repeat 132..169 CDD:293791 10/36 (28%)
WD40 repeat 176..211 CDD:293791 9/43 (21%)
WD40 repeat 223..263 CDD:293791 15/93 (16%)
WD40 repeat 275..322 CDD:293791 7/46 (15%)
WD40 repeat 328..350 CDD:293791 6/22 (27%)
HIRA_B 423..442 CDD:286531 3/18 (17%)
Hira 629..820 CDD:284895
BRWD3NP_732982.1 WD40 176..496 CDD:238121 79/369 (21%)
WD40 181..544 CDD:225201 86/414 (21%)
WD40 repeat 186..223 CDD:293791 14/53 (26%)
WD40 repeat 229..265 CDD:293791 11/36 (31%)
WD40 repeat 270..311 CDD:293791 9/40 (23%)
WD40 repeat 331..364 CDD:293791 8/32 (25%)
WD40 repeat 372..413 CDD:293791 6/40 (15%)
WD40 repeat 428..464 CDD:293791 11/55 (20%)
WD40 repeat 470..495 CDD:293791 6/36 (17%)
Auxin_resp 1083..1167 CDD:284030
Bromo_WDR9_I_like 1196..1311 CDD:99958
Bromo_WDR9_II 1371..1489 CDD:99928
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.