DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hira and pcf2

DIOPT Version :10

Sequence 1:NP_572401.2 Gene:Hira / 31680 FlyBaseID:FBgn0022786 Length:1047 Species:Drosophila melanogaster
Sequence 2:NP_594450.1 Gene:pcf2 / 2542071 PomBaseID:SPAC26H5.03 Length:512 Species:Schizosaccharomyces pombe


Alignment Length:556 Identity:125/556 - (22%)
Similarity:201/556 - (36%) Gaps:173/556 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LLKPAWVHHDDKQ----IFSVDIHKD-CTKFATGGQGSDCGRVVIWNLL-PVLSDKAEFDADVPK 61
            :|:..| |:|...    |:|||..|: ..||||.|..|   ::.||.|: ...|.|.|:      
pombe     5 VLQIRW-HYDANDDHTPIYSVDFQKNSLNKFATCGGDS---KIRIWQLITSESSTKVEY------ 59

  Fly    62 MLCQMDQHLACVNCVRWSQNGQNLASGSDDKLIMIWRKSAGSSGVFGTGG--MQKNHESWKCFYT 124
             |..:.:|...||.||::..|..||:..|:..||:|..:...........  :....|.||....
pombe    60 -LSTLSRHTQAVNVVRFNPEGNILATAGDEGTIMLWVPTNTPITTLADDAEELALAKEYWKVKIV 123

  Fly   125 LRGHDGDVLDLAWSPNDVYLASCSIDNTVIIWDA-------QAFPHSVATLKGHTGLVKGVSWDP 182
            .|....::.||.||.:..:|.:.::||::.::||       |.|.||      |  .|:||.|||
pombe   124 CRSMGSEIYDLCWSVDSNFLIAGAMDNSLRLYDAHTGQLLTQKFDHS------H--YVQGVCWDP 180

  Fly   183 LGRFLASQSDDRSIKI-------------------------WNTMNWSL-----------SHTIT 211
            |.:::.|:|.||||.:                         :|...:.|           |..|:
pombe   181 LNQYIVSESSDRSICLYEIQEEKKNPKKFQLVLKSRICRIEYNVTKFELISVTKPLNNDESSGIS 245

  Fly   212 EPFEE--------------------------------------------CGGT--THILRLSWSP 230
            ||.|.                                            |..|  :...|.::||
pombe   246 EPIETSNNNESPVSKHEALSSTANIVKDGSLERTEPPNSLNSKISYSLYCNETLVSFFRRPAFSP 310

  Fly   231 DGQYLV--SAHAMNGGGPTAQI-----------IEREGWKCDKDFVGHRKAVTCVRFH------N 276
            ||..||  :......|.|..::           |.::...|   ..|.:|.|..|||.      |
pombe   311 DGLLLVTPAGRLRPHGQPNFEVPYTAYIYTRGSITKQPVAC---LNGFKKPVIAVRFSPIHYELN 372

  Fly   277 SILSRQENDGSPSKPLQYCCLAVGSRDRSLSVWMTALQRPMVVIHELFNASILDLTWGPQECLLM 341
            |..:......|.:.|.: ...||..:| ::.::.|...:|......|..:::.|:.|.....:|:
pombe   373 SFSNFSFTSVSFNLPYR-MVFAVACQD-AVYIYDTQTCKPFYRAVNLHYSNLTDIAWNDDGNVLL 435

  Fly   342 ACSVDGSIACLKFTEEELGKAISEEEQNAIIRKMYGKNYVNGLGKSAPVLEHPQRLLLPQGDKPT 406
            ..|:||..:.:.|...|||.                        ||...:..|::    :...|:
pombe   436 MTSIDGFCSVITFEPGELGV------------------------KSQHKISLPEK----RSASPS 472

  Fly   407 KFPLSNNN----EANQRPISKQTETRTKDGKRRITP 438
            ....|.:|    .|....|.::.|: :|..|:||.|
pombe   473 SIDDSQDNTAGGPATTTLIPRKVES-SKVSKKRIAP 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HiraNP_572401.2 WD40 14..349 CDD:238121 103/450 (23%)
WD40 repeat 16..68 CDD:293791 18/53 (34%)
WD40 repeat 74..127 CDD:293791 13/54 (24%)
WD40 repeat 132..169 CDD:293791 13/43 (30%)
WD40 repeat 176..211 CDD:293791 15/70 (21%)
WD40 repeat 223..263 CDD:293791 11/52 (21%)
WD40 repeat 275..322 CDD:293791 9/52 (17%)
WD40 repeat 328..350 CDD:293791 6/21 (29%)
HIRA_B 424..442 CDD:462802 6/15 (40%)
Hira 630..828 CDD:462211
pcf2NP_594450.1 WD40 <18..>203 CDD:441893 61/202 (30%)
WD40 repeat 22..65 CDD:293791 17/52 (33%)
WD40 62..441 CDD:475233 83/391 (21%)
WD40 repeat 70..124 CDD:293791 14/53 (26%)
WD40 repeat 132..167 CDD:293791 10/34 (29%)
WD40 repeat 173..210 CDD:293791 13/36 (36%)
WD40 repeat 304..354 CDD:293791 11/52 (21%)
WD40 repeat 380..415 CDD:293791 7/36 (19%)
Blue background indicates that the domain is not in the aligned region.

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