DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hira and chaf-2

DIOPT Version :10

Sequence 1:NP_572401.2 Gene:Hira / 31680 FlyBaseID:FBgn0022786 Length:1047 Species:Drosophila melanogaster
Sequence 2:NP_490901.2 Gene:chaf-2 / 171747 WormBaseID:WBGene00022141 Length:489 Species:Caenorhabditis elegans


Alignment Length:515 Identity:123/515 - (23%)
Similarity:200/515 - (38%) Gaps:128/515 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 WVHHDDKQIFSVDIHKDCT----KFATGGQGSDCGRVVIWNLLPVLSDKAEFDADV-PK------ 61
            |  ||.|.:.|||:|.:..    :.||.....:. ||.:|..        ||:..: ||      
 Worm    10 W--HDRKGLLSVDLHHETRNGKYRLATASVQKEV-RVRVWEF--------EFEMGLDPKTQENKP 63

  Fly    62 -----MLCQMDQHLACVNCVRWSQNGQN--LASGSDDKLIMIWRKSAGSSGVFGTGGMQKNHESW 119
                 .|..:..|...:|.|::|.:.::  ||||..:..|.|| |.:..........|..|.|:|
 Worm    64 QLTVGFLANLVFHNHAINQVKFSPSKEHELLASGDCEGRITIW-KLSDQPVPPPQDEMPSNKENW 127

  Fly   120 KCFYTLRGHDGDVLDLAWSPNDVYLASCSIDNTVIIWDAQAFPHSVATLKGHTGLV-------KG 177
             ..|.:..|:.||..|.|.|:...|||.|.|:|:.:.||         |.|....|       .|
 Worm   128 -IRYKVLNHNSDVNALCWDPSGTQLASVSNDHTLAVHDA---------LTGKRLFVASNFRSPNG 182

  Fly   178 VSWDPLGRFLASQSDDRSIKIWNTMNWS-LSH-------TITEPFEECGGTTHI----------- 223
            |.|||.|:::|:.|.||.:.:.:.:..: |.|       ::|.|  ...|..|:           
 Worm   183 VCWDPSGKYIATMSPDRKMDLIDAVRGARLKHFSSALLPSMTIP--SANGDLHLETKIHKLFHDD 245

  Fly   224 ------LRLSWSPDGQYLVS--AHAMNGGGPT--AQIIERE--GWK-CDKDFVGHRKAVTCVRFH 275
                  ..|.:||:|:::.:  ||...|....  .....||  |.| ....|....:....|:|.
 Worm   246 QLFSFQRALGFSPNGEFIAAPCAHLELGSSDLYGTYFFRREDLGVKEAPYTFYPAPRPTFLVKFS 310

  Fly   276 N---SIL-SRQEND-GSPSKPLQYCCLAVGSRDRSLSVWMTALQRPMVVIHELFNASILDLTWGP 335
            .   |:| |.:||. |.|     |..|.:.....::..:.:....|:.|:..:...::.|.::..
 Worm   311 PVTFSLLPSTKENHLGLP-----YRLLWIALNKDAIYFYDSQHSYPVAVVDNIHLNALTDASFSH 370

  Fly   336 QECLLMACSVDGSIACLKFTEEELGKAISE-----EEQNAIIRKMYGKNYVNGLGKS--APVLE- 392
            ...:|:..|::|..:.:|....:.|:.::|     ...|.|..|...|.      ||  |.|:| 
 Worm   371 DGRVLVVSSLEGFCSFVKINLTQWGEVMTEIVPVCGSPNLIEEKKQKKR------KSTVAVVIEK 429

  Fly   393 ----------HPQRLLLPQGDKPTKFPLSNNNEANQRPISK------QTETRTKDGKRRI 436
                      .|.|       ||::.|..:..:|...|::|      .||:.|...|:||
 Worm   430 EKEKEEDAAKSPMR-------KPSETPKVSTPKAAGTPLTKFFKKENNTESPTPPVKKRI 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HiraNP_572401.2 WD40 14..349 CDD:238121 94/396 (24%)
WD40 repeat 16..68 CDD:293791 14/67 (21%)
WD40 repeat 74..127 CDD:293791 16/54 (30%)
WD40 repeat 132..169 CDD:293791 12/36 (33%)
WD40 repeat 176..211 CDD:293791 12/42 (29%)
WD40 repeat 223..263 CDD:293791 11/63 (17%)
WD40 repeat 275..322 CDD:293791 11/51 (22%)
WD40 repeat 328..350 CDD:293791 4/21 (19%)
HIRA_B 424..442 CDD:462802 6/13 (46%)
Hira 630..828 CDD:462211
chaf-2NP_490901.2 WD40 <27..382 CDD:441893 88/381 (23%)
WD40 repeat 81..134 CDD:293791 16/54 (30%)
WD40 repeat 139..178 CDD:293791 15/47 (32%)
WD40 repeat 181..216 CDD:293791 12/34 (35%)
Blue background indicates that the domain is not in the aligned region.

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