DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CHES-1-like and Foxb2

DIOPT Version :10

Sequence 1:NP_511071.3 Gene:CHES-1-like / 31678 FlyBaseID:FBgn0029504 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_001162056.1 Gene:Foxb2 / 691398 RGDID:1585019 Length:425 Species:Rattus norvegicus


Alignment Length:389 Identity:82/389 - (21%)
Similarity:124/389 - (31%) Gaps:155/389 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   696 HTNNKPPYSFSSLIFMAIEGSNEKALPVKEIYAWIVQHFPYFKTAPNGWKNSVRHNLSLNKSFVK 760
            :::.|||||:.||..|||:.|.||.||:.:||.:|::.|||::.....|:||:|||||.|..|:|
  Rat     9 YSDQKPPYSYISLTAMAIQHSAEKMLPLSDIYKFIMERFPYYREHTQRWQNSLRHNLSFNDCFIK 73

  Fly   761 VEKAPNM-GKGSLWRVEPQ-----------QRQNLIQALN------------------------- 788
            :.:.|:. ||||.|.:.|.           :|:...:.|.                         
  Rat    74 IPRRPDQPGKGSFWALHPDCGDMFENGSFLRRRKRFKVLRADHAHLHSGSSKGAPGTGPGGHLHP 138

  Fly   789 -----------------------------------------------RSPFFPNSAVDKISPSLK 806
                                                           :.|..|:....:..|..:
  Rat   139 HHPHHAHHHHHHHHHAAHHHHHHHPPQPPPPPPHMVPYFHQQPAPAPQPPHLPSQPAQQPPPQSQ 203

  Fly   807 SPSGGSAYDSLDGGGSGSVSSAQPVAGGAGVPAAAAVALSTPTKSNGLALANGASQATNAARPHS 871
            .|....         .|.:..|..||..|...|||||                            
  Rat   204 PPQTSH---------PGKMQEAAAVAAAAAAAAAAAV---------------------------- 231

  Fly   872 PNGGGSGSHARFDPYLFPNLSKAFRNIREDTVG--QPMLQDALDDELSGDYHNNNNNNSGSKYNY 934
               |..|..::|.||...:.:.|.......|.|  .|.   |:::.:..|              |
  Rat   232 ---GSVGRLSQFPPYGLGSAAAAAAAAAASTTGFKHPF---AIENIIGRD--------------Y 276

  Fly   935 MGANGSGGAGSGGVGSNANGASDGINFARLARDCGA--------DSIDDVHAAAAMLYLKHGPK 990
            .|...:||.....|..:......|    :|....|:        ||:....||||...:..||:
  Rat   277 KGVLQAGGLPLASVMHHLGYPVPG----QLGNVVGSVWPHVGVMDSVAAAAAAAAAAGVPVGPE 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHES-1-likeNP_511071.3 FH_FOXN2-like 700..775 CDD:410805 38/75 (51%)
Foxb2NP_001162056.1 FH_FOXB2 1..110 CDD:410817 40/100 (40%)
PRK12323 <354..>413 CDD:481241
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.