DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CHES-1-like and foxn3

DIOPT Version :9

Sequence 1:NP_001259311.1 Gene:CHES-1-like / 31678 FlyBaseID:FBgn0029504 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_001016300.2 Gene:foxn3 / 549054 XenbaseID:XB-GENE-483117 Length:486 Species:Xenopus tropicalis


Alignment Length:534 Identity:145/534 - (27%)
Similarity:214/534 - (40%) Gaps:180/534 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   687 NNVPYDPLVHTNNKPPYSFSSLIFMAIEGSNEKALPVKEIYAWIVQHFPYFKTAPNGWKNSVRHN 751
            :::|||...:.|.|||||||.|||||||.|..|.||||:||.||::|||||..||.|||||||||
 Frog   100 SDMPYDAKQNPNCKPPYSFSCLIFMAIEDSPTKRLPVKDIYNWILEHFPYFANAPTGWKNSVRHN 164

  Fly   752 LSLNKSFVKVEK--APNMGKGSLWRVEPQQRQNLIQALNRSPFFPNSAVDKISPSLKSPSGGSAY 814
            |||||.|.||:|  :.::||||||.::|:.||||||||.::|:.|.|.|....|:  ||   .||
 Frog   165 LSLNKCFKKVDKDRSQSIGKGSLWCIDPEYRQNLIQALKKTPYHPYSHVFNTPPT--SP---QAY 224

  Fly   815 DSLDGGGSGSVSSAQPVAGGAGVPAAAAVALSTPTKSNGLAL------ANGASQATNAARPHSPN 873
            .|         :|..|:..|           ||..|.||..|      |..|....|:|  |...
 Frog   225 QS---------TSVPPLWPG-----------STFFKKNGALLQDPDIDAASAMMLLNSA--HELQ 267

  Fly   874 GGGSGSHARFDPYLFPNLSKA-----FRNIREDTVGQPMLQDALDDELSGDYHNNNNNNSGSKYN 933
            .|       ..|.:..|.::.     |..:|...:..                            
 Frog   268 AG-------LPPGVIQNGARVLNRGIFSGVRPLPINP---------------------------- 297

  Fly   934 YMGANGSGGAGSGGVGSNANGASDGINFARLARDCGADSIDDVHAAAAMLYLKHGPKIYSEPFQN 998
                          :|:.|....:||...|                         .::.|||  :
 Frog   298 --------------IGAMAASVRNGIANCR-------------------------TRMESEP--S 321

  Fly   999 GSGPVITSSPSEDHTYSAGGNSNADSGS-STPLTNGNA------LASVAQAVAQGQNNQGGAGSD 1056
            ...|:::|.|.:||.||:..::|..|.| |..:::.:|      .|.|.:           .|||
 Frog   322 CGSPLVSSDPKDDHNYSSAKSANKRSSSPSDSISSSSADDHYEFAAKVCR-----------EGSD 375

  Fly  1057 SNCASSDAAYDSSEENHNITPEEMADRQRHRDGVDALLSLSGSSIVECGSVATTHYHSNGSSGSS 1121
            .:..|.::..::.||:.....:|:.|                 |:||.|                
 Frog   376 ISFQSHESFSETEEEDKKQIKKELKD-----------------SLVESG---------------- 407

  Fly  1122 HGSPHKRASSHSLEEEHLQQHREQQLQQQQQQQQHHHQQFGSSQAVYTNGSGSKMAL------LS 1180
            :.|.||:       ::||.:.|.........:::...:...|........:||.:.|      |:
 Frog   408 YSSQHKK-------KQHLLKLRRIPSDALPLKKRRTEKPPESDDEEMKEAAGSLLHLAGIRSCLN 465

  Fly  1181 SAAANVALAQQQQQ 1194
            :.....|..|::|:
 Frog   466 NITNRTAKGQKEQK 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHES-1-likeNP_001259311.1 Forkhead 700..785 CDD:278670 60/86 (70%)
foxn3NP_001016300.2 Forkhead 113..199 CDD:365978 59/85 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 126 1.000 Domainoid score I5338
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48206
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5832
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.030

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