DRSC/TRiP Functional Genomics Resources

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Protein Alignment CHES-1-like and foxc1

DIOPT Version :9

Sequence 1:NP_001259311.1 Gene:CHES-1-like / 31678 FlyBaseID:FBgn0029504 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_001007864.1 Gene:foxc1 / 493250 XenbaseID:XB-GENE-479055 Length:495 Species:Xenopus tropicalis


Alignment Length:700 Identity:165/700 - (23%)
Similarity:237/700 - (33%) Gaps:280/700 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   572 LQARSLQLSVSPP-----PPNMTPTSQVHNGSLGGGGGGGGGSGGGGGGGGANLRSPNSYASYDN 631
            :|||   .|||.|     .|.::.....:..:......|||.:|         :.:|.|..|   
 Frog     1 MQAR---YSVSSPNSLGVVPYLSGEQSYYRAAAAAAAAGGGYTG---------MAAPMSMYS--- 50

  Fly   632 EDSLKEFDLVVSSRLHTSTPQYSVSKNGANGYGNGNSNVNGSGAGSNTPQKQKHPNNVPYDPLVH 696
                           |.:..||....  |..|            |..|||.|      |.|.:  
 Frog    51 ---------------HPAHEQYQAGM--ARAY------------GPYTPQPQ------PKDMV-- 78

  Fly   697 TNNKPPYSFSSLIFMAIEGSNEKALPVKEIYAWIVQHFPYFKTAPNGWKNSVRHNLSLNKSFVKV 761
               |||||:.:||.|||:.:.||.:.:..||.:|::.||:::....||:||:|||||||:.||||
 Frog    79 ---KPPYSYIALITMAIQNAPEKKITLNGIYQFIMERFPFYRDNKQGWQNSIRHNLSLNECFVKV 140

  Fly   762 ---EKAPNMGKGSLWRVEPQQRQNLIQ---ALNRSPFFPNSAVDKISPS------LKSPSG---- 810
               :|.|  ||||.|.::|.. .|:.:   .|.|...|....|.|.:..      ||...|    
 Frog   141 PRDDKKP--GKGSYWTLDPDS-YNMFENGSFLRRRRRFKKKDVVKDATKEDKDRLLKEHHGSQPA 202

  Fly   811 ----------GSAYDSLDGGGSGSVSSAQPVA--------GGAGVPAAAAVALSTPTKSNGLALA 857
                      |.|....|.|       :|||.        |.:..|.|.:.||||..|...    
 Frog   203 AAQQQRQQQQGQAQAEQDSG-------SQPVRIQDIKTENGTSSPPQAMSPALSTVPKIES---- 256

  Fly   858 NGASQATNAARPHSPNGGGSGSHARFDPYLFPNLSKAFRNIREDTVGQPMLQDALDDELSGDYHN 922
                       |.|.:...|||     |:..|:             .:.|..:|.:   |...|.
 Frog   257 -----------PDSSSSMSSGS-----PHSIPS-------------NRSMSLEAAE---SHHPHQ 289

  Fly   923 NNNNNSGSKYNYMGANGSGGAGSGGVGSNANGASDGINFARLARDCGADSIDDVHAAAAMLYLKH 987
            .::::.|.                                         |:|::     |..|:.
 Frog   290 QHHHSQGF-----------------------------------------SVDNI-----MTSLRG 308

  Fly   988 GPKIYSEPFQNGSG----PVITSS-----PSEDHTYSAGGNSNADSGS--STPLTNGNALASVAQ 1041
            .|:        |||    |:|:||     ||...|||.|      .||  |.|            
 Frog   309 SPQ--------GSGELPSPLISSSRTGIAPSSLLTYSPG------QGSIYSPP------------ 347

  Fly  1042 AVAQGQNNQGGAGSDSNCASSDAAYDSSEENHNITPEEMADRQRHRDGVDALLSLSGSSIVECGS 1106
             .:||.::.||||: .:|.....:..|.:.:.::||..........|.:...            |
 Frog   348 -CSQGTSSGGGAGT-YHCNMQAMSLYSGDRSGHLTPANTPAATTVEDTLPDY------------S 398

  Fly  1107 VATTHYHSNGSSGSSHGSPHKRASSHSLEEEHLQQHREQQLQQQQQQQQHHHQQFGSSQAVYTNG 1171
            :.||     .:|..|||:                             |:|.||  |...:.|.|.
 Frog   399 ITTT-----TTSALSHGN-----------------------------QEHPHQ--GRLPSWYLNQ 427

  Fly  1172 SGSKMALLSSAAANVALAQQQQQQIHQDMY-SSTAGHNASMYLGGLNSHC 1220
            :|.    |...|......|||.....::|: |...|.|:|...|  ||.|
 Frog   428 AGD----LGHLAGATYPGQQQNFHSVREMFESQRLGLNSSPVNG--NSSC 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHES-1-likeNP_001259311.1 Forkhead 700..785 CDD:278670 41/87 (47%)
foxc1NP_001007864.1 Forkhead 79..164 CDD:365978 41/87 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 175..322 42/243 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1270467at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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