DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CHES-1-like and Foxd2

DIOPT Version :9

Sequence 1:NP_001259311.1 Gene:CHES-1-like / 31678 FlyBaseID:FBgn0029504 Length:1268 Species:Drosophila melanogaster
Sequence 2:XP_233422.5 Gene:Foxd2 / 313504 RGDID:1304642 Length:494 Species:Rattus norvegicus


Alignment Length:501 Identity:131/501 - (26%)
Similarity:180/501 - (35%) Gaps:129/501 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   606 GGGSGGGGGGGGANLRSPNSYASYDNEDSLKEFDLVVSSRLHTS------TPQYSVSKNGANGYG 664
            |||||||.....:..|:|.....:.:|...:|.:..|:.....|      .|:....:..|...|
  Rat    31 GGGSGGGELTARSGPRAPRDVLPHGHELPPEEAEADVAEDEEESGGCSDCEPRALGPRGAAAAAG 95

  Fly   665 NGNSNVN--------GSGAGSNTPQKQKHPNNVPYDPLVHTNNKPPYSFSSLIFMAIEGSNEKAL 721
            :....|.        |.|.|...|.    .......|||    |||||:.:||.|||..|.:|.|
  Rat    96 SPGPGVQAARGATGPGPGPGPGPPS----GGAATRSPLV----KPPYSYIALITMAILQSPKKRL 152

  Fly   722 PVKEIYAWIVQHFPYFKTAPNGWKNSVRHNLSLNKSFVKVEKAP-NMGKGSLWRVEPQQ------ 779
            .:.||..:|...|||::.....|:||:|||||||..|||:.:.| |.|||:.|.::|:.      
  Rat   153 TLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDN 217

  Fly   780 ----RQNLIQALNRSPFFPNSAVDKISPSLKSPSGGSAYDSLDGGGSGSVSSAQPVAGGAGV--- 837
                |:.  :...|.|..|........|.|....|.:|     .|..|:..|.....|..|.   
  Rat   218 GSFLRRR--KRFKRQPLPPPHPHPHPHPELLLRGGAAA-----AGDPGAFLSGFAAYGAYGYGYG 275

  Fly   838 --------------------PAAAAVALSTPTKSN-----------GLALANGASQATNAARPHS 871
                                |.|.|.|.:.|.:.:           |...|:..:.||:|..| :
  Rat   276 LALPAYGAPPPGPAPHPHPHPHAFAFAATAPCQLSVPPGRAAAPPPGPPTASVFASATSAPAP-A 339

  Fly   872 PNGGGSGSHARFDPYLFPNL--SKAF--RNIREDTVG-QPMLQDALDDELSGDYHNNNNNNSGSK 931
            |..|...|.|....:|...|  :|||  .::.....| ...|..||             ...|.|
  Rat   340 PAPGSGPSPAGLPAFLGAELGCAKAFYPASLSPPAAGTAATLSSAL-------------LRQGLK 391

  Fly   932 YNYMGANGSGGAGS--------------GGVGSNANGASDGINFARLARDCGADSIDDVHAAAAM 982
            .:..|..|.||||:              ||.|:...|:.||             |.....|||| 
  Rat   392 TDAGGGAGGGGAGAGQRPSFSIDHIMGHGGGGAAPPGSGDG-------------SPGSPFAAAA- 442

  Fly   983 LYLKHGPKIYSEPFQNGSGPVITSSPSEDH-TYSAGGNSNADSGSS 1027
                 ||...::.....:.|.:|  |...| ..|..|:|...||.|
  Rat   443 -----GPGGQAQVLAMLTAPALT--PVAGHIRLSHPGDSLLSSGPS 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHES-1-likeNP_001259311.1 Forkhead 700..785 CDD:278670 40/95 (42%)
Foxd2XP_233422.5 FH_FOXD1_D2-like 131..229 CDD:410820 40/99 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1270467at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.