DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CHES-1-like and pha-4

DIOPT Version :9

Sequence 1:NP_001259311.1 Gene:CHES-1-like / 31678 FlyBaseID:FBgn0029504 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_001041114.1 Gene:pha-4 / 180357 WormBaseID:WBGene00004013 Length:506 Species:Caenorhabditis elegans


Alignment Length:623 Identity:134/623 - (21%)
Similarity:222/623 - (35%) Gaps:214/623 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   385 TTSSSSSSNTTTHHPHKKYL-------REKMHVQMDHSSHVASTVTVVSSPASSNNSSISSSNTG 442
            ||::|:.|..:....:||.|       ||:.|..:                  .|.::..:|:||
 Worm    32 TTTNSTDSEDSVEQENKKLLETEKNRKREQKHKML------------------PNGTTSGTSDTG 78

  Fly   443 SVSGSGSSTAAVNGGNSPVPKTSSFSTVFEAVNY-ATSAASNSSSSSNSTPNSQAILHGQESPAV 506
                            :.||.|||.::   :|:| |.:|.....:.||:|.|.|...:...:..:
 Worm    79 ----------------NQVPATSSAAS---SVDYTAMNAQDYLPTYSNTTLNYQPYQYQTAANGL 124

  Fly   507 VTTTTLISAGTLPPGYSFVNQVASTPHVLSTPAHVASPETPPGAALLPGTYYATSTTSAGTTTTT 571
            :.......       |:..||:.|.        :::......|..:.| ..:.|.||.|.|...:
 Worm   125 LNYNNYSQ-------YATANQLGSN--------YISPANFMQGGGISP-LGFTTGTTGATTAAAS 173

  Fly   572 LQARSLQLSV------SPPPPNMTPTSQVHNGSLGGGGGGGGGSGGGGGGGGANLRSPNSYASYD 630
            :...|....:      |......:|..:.::|..||.|                           
 Worm   174 VATSSASAVIGRSNGRSSSTVAASPADRSYSGVSGGQG--------------------------- 211

  Fly   631 NEDSLKEFDLVVSSRLHTSTPQYSVSKNGANGYGNGNSNVNGSGAGSNTPQKQKHPNNVPYDPLV 695
            .|.:::||:.|..          .:.::|..|                                 
 Worm   212 QELTIQEFETVTE----------KIRRHGTYG--------------------------------- 233

  Fly   696 HTNNKPPYSFSSLIFMAIEGSNEKALPVKEIYAWIVQHFPYFKTAPNGWKNSVRHNLSLNKSFVK 760
              .:|||||:.|||.|||:.||.:.|.:.|||.||:..|||::.....|:||:||:||.|..|||
 Worm   234 --QSKPPYSYISLITMAIQKSNSRQLTLSEIYNWIMDLFPYYQNNQQRWQNSIRHSLSFNDCFVK 296

  Fly   761 VEKAPNM-GKGSLWRV-------------------------EP--QQRQNLIQALNRSPFFPNSA 797
            |.::|:. ||||.|.:                         ||  ::|....|.|::....|...
 Worm   297 VARSPDKPGKGSFWTLHEHCGNMFENGCYLRRQKRFKVKEREPSRKKRNANSQQLHQQQHIPKME 361

  Fly   798 VDKISP-SLKSPSGGSAYDSLDGGGSGSVSSAQPVAGGAGVPAAAAVALSTPTKSN-GLALANGA 860
            :.:..| |:.:.|...||..:.     .:|:.:.:.     ....||..:|...:| ||...:|.
 Worm   362 IKEEDPTSITTTSSLGAYSLIP-----QISTKKEIK-----EELKAVQDATAAAANLGLIDPSGT 416

  Fly   861 SQATNAARPHSP-NGGG-----------SGSHARFDPYLFPNLSKAFRNIREDTVGQPMLQDALD 913
            ..|.|.::|.|. :..|           :|.:|  .|||:   |..|..|      .|..|:.|:
 Worm   417 PSAVNHSQPTSVISSVGTLGTTQAQMTLNGQYA--SPYLY---SSDFATI------LPQSQNFLN 470

  Fly   914 DELSGDYHNNNNNNSGSKYN--------YMGANGSGGA 943
            :.|    :|..::..|..|.        |...|.:..|
 Worm   471 NTL----YNTTSSYPGIDYTNGVYQNTLYSSTNPNSAA 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHES-1-likeNP_001259311.1 Forkhead 700..785 CDD:278670 43/112 (38%)
pha-4NP_001041114.1 FH 236..324 CDD:214627 40/87 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1270467at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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