DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CHES-1-like and foxc1a

DIOPT Version :9

Sequence 1:NP_001259311.1 Gene:CHES-1-like / 31678 FlyBaseID:FBgn0029504 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_571803.1 Gene:foxc1a / 100148408 ZFINID:ZDB-GENE-010302-1 Length:476 Species:Danio rerio


Alignment Length:572 Identity:134/572 - (23%)
Similarity:202/572 - (35%) Gaps:192/572 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   572 LQARSLQLSVSPP-----PPNMTPTSQVHNGSLGGGGGGGGGSGGGGGGGGANLRSPNSYASYDN 631
            :|||   .|||.|     .|.::.....:..:.|||..|                .|.....|. 
Zfish     1 MQAR---YSVSSPNSLGVVPYISSDQSYYRAAAGGGYTG----------------MPAPMTMYS- 45

  Fly   632 EDSLKEFDLVVSSRLHTSTPQYSVSKNGANGYGNGNSNVNGSGAGSNTPQKQKHPNNVPYDPLVH 696
                           |.:..||..|.  |..|            |..|||.|      |.|.:  
Zfish    46 ---------------HAAHDQYPASM--ARAY------------GPYTPQPQ------PKDMV-- 73

  Fly   697 TNNKPPYSFSSLIFMAIEGSNEKALPVKEIYAWIVQHFPYFKTAPNGWKNSVRHNLSLNKSFVKV 761
               |||||:.:||.|||:.|.:|.:.:..||.:|::.||:::....||:||:|||||||:.||||
Zfish    74 ---KPPYSYIALITMAIQNSPDKKVTLNGIYQFIMERFPFYRDNKQGWQNSIRHNLSLNECFVKV 135

  Fly   762 ---EKAPNMGKGSLWRVEPQQRQNLIQALNRSPFFPNSAVDKISPSLKSPSGGSAYDSLDGGGSG 823
               :|.|  ||||.|.::|.. .|:.:   ...|.......|...::|        |..|.|...
Zfish   136 PRDDKKP--GKGSYWTLDPDS-YNMFE---NGSFLRRRRRFKKKDAMK--------DKEDRGVKE 186

  Fly   824 SVS-SAQPVA--GGAGVPAAAAVALSTPTKSNGLALANGASQATNAARP--------HSPNGGGS 877
            :.| .|||.|  ....||.      |.|.:...:...||.|....|..|        .||:...|
Zfish   187 APSRQAQPQAREQEQSVPG------SQPVRIQDIKTENGTSTPPQAVSPTLSTVPKIESPDSSSS 245

  Fly   878 GSHARFDPYLFPNLSKAFRNIREDTVGQPMLQ--------DALDDELSGDYHNNNNNNSGSKYNY 934
            .|..  .|:..|:.    |::..|:.|:...|        |.:...|.|..|::           
Zfish   246 MSSG--SPHSIPST----RSLSLDSAGEQHHQAPAQGFSVDNIMTSLRGSPHSS----------- 293

  Fly   935 MGANGSGGAGSGGVGSNANGASDGINFARLARDCGADSIDDVHAAAAMLYLKHGPKIYSEPFQNG 999
                                       ..|.....|.|...:....::.|..:...:||.|....
Zfish   294 ---------------------------GELTPSLVAPSRTGITPTLSLNYSPNQSSVYSSPCSQN 331

  Fly  1000 SGPVITSSPSEDH------TYSAGGNSNADSG-----------------SSTPLTNGNALASVAQ 1041
            |  :.|:|.:..|      :..|||:.:...|                 :::.|::|| |:|..:
Zfish   332 S--ISTTSNATYHCNMQAMSLYAGGDRSGHLGTTATTVDETLPDYSITTTTSSLSHGN-LSSAQE 393

  Fly  1042 A-------VAQGQNNQGGAGSDSNCASSDAAYDSSEEN-HNITPEEMADRQR 1085
            .       :|....||.|     :.....|.|.:.::| |::  .||.:.||
Zfish   394 GHHPHQGRLASWYLNQAG-----DIGHLGATYPAQQQNFHSV--REMFESQR 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHES-1-likeNP_001259311.1 Forkhead 700..785 CDD:278670 41/87 (47%)
foxc1aNP_571803.1 Forkhead 74..160 CDD:278670 41/91 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 169..271 28/121 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 284..303 4/56 (7%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1270467at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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