DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CHES-1-like and foxj3

DIOPT Version :9

Sequence 1:NP_001259311.1 Gene:CHES-1-like / 31678 FlyBaseID:FBgn0029504 Length:1268 Species:Drosophila melanogaster
Sequence 2:NP_001103516.1 Gene:foxj3 / 100126207 XenbaseID:XB-GENE-481185 Length:603 Species:Xenopus tropicalis


Alignment Length:636 Identity:136/636 - (21%)
Similarity:205/636 - (32%) Gaps:250/636 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   632 EDSLKEFDLVVSSRLHTSTPQYSVSKNGANGYGNGNSNVNGSGAGSNTPQKQKHPNNVPYDPLVH 696
            |.||...|.:....:..:......|:: |:|.|....|   |....||...|:....       |
 Frog     6 ESSLTSMDWLPKITVRAAIQSSDCSQH-AHGTGIPKKN---SVLDPNTTLDQEEVQQ-------H 59

  Fly   697 TNNKPPYSFSSLIFMAIEGSNEKALPVKEIYAWIVQHFPYFKTAPNGWKNSVRHNLSLNKSFVKV 761
            .:.|||||::|||..||..|.:|.:.:.|||.||..:|||:|.|.:|||||:||||||||.|:||
 Frog    60 KDGKPPYSYASLITFAINSSPKKKMTLSEIYQWICDNFPYYKEAGSGWKNSIRHNLSLNKCFLKV 124

  Fly   762 EKA-PNMGKGSLWRVEPQQRQNLIQALNR----------SPF-----------------FPNSAV 798
            .:: .:.||||.|.::...:::..||..|          :|:                 .||.|:
 Frog   125 PRSKDDPGKGSYWAIDTNPKEDAAQARPRKRPRSEERASTPYSIDSDSLGMDCIIPGSASPNLAI 189

  Fly   799 DKI---------------SP--SLKSPSGGSAYDSLDGGGSGSVSSAQPVAGGAGVPAAAAVALS 846
            :.:               ||  ||.:.....:..||:....|||.|...|.             |
 Frog   190 NTVTNKVTLYNTDQDGNDSPRSSLNNSLSDQSVSSLNLNNVGSVHSYTSVT-------------S 241

  Fly   847 TPTKSNGLALANGASQATNAARPHSPNGGGSGSHARFDPYLFPNLSKAFR----NIREDTVGQPM 907
            .|..|         :|......|:|    .......|..|.|.:||.:||    ::.|.:|.|.:
 Frog   242 HPEPS---------AQTLTQQSPYS----APERDKLFPEYNFEDLSDSFRSLYKSVFEHSVSQGL 293

  Fly   908 L----------------QDALDDELSGDYHNNNNNNSGSKYNYMGANGSGGAGSGGVGSNANGAS 956
            :                |.:....:|...|::.||.:.|..:.:|.|         ||       
 Frog   294 MNLPSESSQQTHSPCSYQHSPSSTMSSQQHSSQNNITNSHASNLGTN---------VG------- 342

  Fly   957 DGINFARLARDCGADSIDDVHAAAAMLYL---KHGPKIYSEPFQNGSGPVITSSPSEDHTYSAGG 1018
                          ||:..||.:...|:.   :|.|.|:                          
 Frog   343 --------------DSMGQVHLSHTQLHTQQSQHSPHIH-------------------------- 367

  Fly  1019 NSNADSGSSTPLTNGNALASVAQAVAQGQNNQGGAGSDSNCASSDAAYDSSEENHNIT----PEE 1079
                                                                  ||:.    |::
 Frog   368 ------------------------------------------------------HNVVHHQHPQQ 378

  Fly  1080 MADRQRHRDGVDALLSLSGSSIVECGSVATTHYHSNGSSGSSHGSPHKRASSHSLEEEHLQQHRE 1144
            ....                         |:|.|........|  |.:|| .|..:.:|:|.|..
 Frog   379 CTQH-------------------------TSHCHQQSPHQPQH--PQQRA-QHPAQHQHIQHHPN 415

  Fly  1145 QQLQQQQQQQQHHHQQFGSSQAVYTNGSGSKMALLSSAAAN---VALAQQQ 1192
            .|.|....|.....||.......|:.....|.:...:::||   |.|:|.|
 Frog   416 HQHQSLAHQTSLTQQQIPCGNDWYSTLDMLKESCRIASSANWSDVDLSQFQ 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHES-1-likeNP_001259311.1 Forkhead 700..785 CDD:278670 43/85 (51%)
foxj3NP_001103516.1 FH_FOXJ3 62..140 CDD:410826 43/77 (56%)
COG5025 <63..329 CDD:227358 81/291 (28%)
KLF1_2_4_N <342..419 CDD:425360 24/205 (12%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1270467at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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