DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cph and Sall1

DIOPT Version :10

Sequence 1:NP_001356899.1 Gene:Cph / 31660 FlyBaseID:FBgn0029939 Length:1254 Species:Drosophila melanogaster
Sequence 2:NP_001100885.2 Gene:Sall1 / 307740 RGDID:1309916 Length:1315 Species:Rattus norvegicus


Alignment Length:1296 Identity:261/1296 - (20%)
Similarity:423/1296 - (32%) Gaps:375/1296 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TQDILTCG-ACQKAFALSDIVKFIQHKVLQCNKENY-----------------GQCATQNP--QM 74
            ::|...|| .|.:.|.|||:   :.|| ..|.|...                 |..:..||  ||
  Rat    39 SKDAHVCGRCCAEFFELSDL---LLHK-KSCTKNQLVLIVNESPASPPKTFPPGPPSLNNPDEQM 99

  Fly    75 -----DRDAEEGRPLSL---VNRRPSISAPISGRKSAPASAAAAVAAAAAAAAAAAAASSTASGS 131
                 ..|.|:...||.   ::|..|:...:....|:.:|....:::....|..:..:.|:...|
  Rat   100 KFVASKADQEDCGDLSEHKGLDREESMETEVPVATSSSSSNGGTLSSVTNIATPSCHSGSSTGTS 164

  Fly   132 RIHTPPPSPADLLADGASST-PKRLVDENDNTTPKDSETGATTLDSNAAPSSPAAIERQSSGDS- 194
            .|.|..|...||...|..|. ...::.||              |.|.....:..:.|.:..|.| 
  Rat   165 AITTSLPQLGDLTTLGNFSVINSNVIIEN--------------LQSTKVAVAQFSQEARCGGASG 215

  Fly   195 -----SCEMEEQQDRQDKQSQPKQAKVKQEPYDEEGVNHH------QNQDDDDDEEMEERSLAKR 248
                 |..||:....|.:|....|.        .|.:.|.      ||.|         .|.:..
  Rat   216 GKLLISALMEQLLALQQQQIHQLQL--------IEQIRHQILLLASQNAD---------LSASSV 263

  Fly   249 PKMELVDAEANTVHTEPSN------------YTCSTCKTRYTSAWRL--IQHVQHSHGVKIYVES 299
            |....:...||.:.|..|:            .:.::.....:...:|  :|..|.|.|..|   .
  Rat   264 PSQGTLRTSANPLTTLSSHLSQQLAVAAGLAQSLASQSANISGVKQLPPVQLPQSSSGTII---P 325

  Fly   300 PGGG-------ATLTVATPAA-----------LNNSALALAAAAAAASASGLAS-------PQP- 338
            |..|       .|.||.||::           ::..|::.:::.||.:.|.|.|       ||| 
  Rat   326 PSSGPSPNVSMVTATVPTPSSEKVASNAGASHVSPPAVSASSSPAAFAISSLLSPASNPLLPQPT 390

  Fly   339 ---AVSPNP--------------AVTSSAKRSSPLGAAGSTILSTSVSS-------TCSNSLVNT 379
               ||.|.|              :..:..::|.|.........|||..:       .|:....:.
  Rat   391 PANAVFPTPLPNIATTAEDLNALSALAQQRKSKPPNVTAFEAKSTSDEAFFKHKCRFCAKVFGSD 455

  Fly   380 SGGSISNTSSIGS------------PQQQQLQLQQQQAQQQQQRVQQ------QQRENL--ASAM 424
            |...|...|..|.            ..:..|::..|:.:::...:|.      :..:|:  ::.:
  Rat   456 SALQIHLRSHTGERPFKCNICGNRFSTKGNLKVHFQRHKEKYPHIQMNPYPVPEHLDNVPTSTGI 520

  Fly   425 AAGMRHHPLLPPPEAMHANPF-----QLLRMPLPPALAQAGNVVPTVAPLFGRPSPADHYRMEQL 484
            ..||...|..|....:...|.     ..:.:||||.|......:.|..|   .|.|..|      
  Rat   521 PYGMSIPPEKPVTSWLDTKPVLPTLTTSVGLPLPPTLPSLTPFIKTEEP---APIPISH------ 576

  Fly   485 VSEQFRHHGFNLAAAAAAAQAQFNANGQVVGGVVSGSGEP----RPPSSSSSGSQRGSVPPAALP 545
                          :||:.|          |.|.|.||.|    |.||.....::..:|||..  
  Rat   577 --------------SAASPQ----------GSVKSDSGAPDLATRNPSGVPEEAEGSAVPPFG-- 615

  Fly   546 PPSLSSQQQQQQQQAVQQQQQQGAQQQLQSAQQQQQSQQQSQQQQQITPGLVGGAGGSLKLEPQQ 610
                    .:.:..:|...........|.|                  |...||||         
  Rat   616 --------GKGEDSSVVSSIPTAGSSALNS------------------PVADGGAG--------- 645

  Fly   611 MDFYSQRLRQLAGTTSPGAGSTVNSSSPSPRQKQSPHFASPSPSQQQQQQLATIPRPHSLTPPEK 675
                        |||                      |.:|......:|..|..|....|...: 
  Rat   646 ------------GTT----------------------FTNPLLPLMSEQFKAKFPFGGLLDSAQ- 675

  Fly   676 LGDASSENGSLGLILASTPRSASTPPSKTGDVSLQEPIAHCYSCSYCDKKFRFENNLIIHQRTHT 740
                :||...|..::.:..:.|:.|                ..|..|.:....::.|.:|.||||
  Rat   676 ----ASETSKLQQLVENIDKKATDP----------------NECVICHRVLSCQSALKMHYRTHT 720

  Fly   741 GEKPYKCTACDFECSHIQKLMKHMRVHRS--PADDQDN-QDNQDDGSNADSLETN-------EAD 795
            ||:|:||..|....:....|..|..|||:  |...|.: ...|...:||..|:.:       :..
  Rat   721 GERPFKCKICGRAFTTKGNLKTHYSVHRAMPPLRVQHSCPICQKKFTNAVVLQQHIRMHMGGQIP 785

  Fly   796 NDEDPN--PDESEEELGDGDNDPDGDGDLDGEDEDEDE-LEECEDMDYKAEDLSVSNRIDGKSQS 857
            |...|:  |:..|.:.|..|     :.:.|..|...|| :|||.:........|.....|..|.|
  Rat   786 NTPVPDNYPESMESDTGSFD-----EKNFDDLDNFSDENMEECPEGSIPDTPKSADASQDSLSSS 845

  Fly   858 PKTTSSGATSLVGELMDKFGLSNIAQYSEAYKQALQ--ESGRKEAAAAAAAAAAAADNNNRGGAG 920
            |....   .|.:..|.::..:.| |..:|..:.:|:  |:|..|.......:::...:.....:|
  Rat   846 PLPLE---MSSIAALENQMKMIN-AGLAEQLQASLKSVENGSVEGDVLTNDSSSVGGDVESQSSG 906

  Fly   921 AP-LSDKLNGL-PVAALRLRDEFAKNCNMFQQPQDGGAPSQVPLFNPFPNPFELSKRMKMDGGDW 983
            :| :|:..:.: .::......||.|:.|:.::||..|........:|.|          ::||  
  Rat   907 SPAISESTSSMQALSPSNSTQEFHKSPNVEEKPQRVGPGEFANGLSPTP----------VNGG-- 959

  Fly   984 WGMSQALHRNEALFENLKLKPLGLGGANSLIQGPLLKKESRQRNDTCEFCGKVFKNCSNLTVHRR 1048
                 ||....:..|.: :|...||     |..| .:...:.:|..|:.|||.|...|.|.:|.|
  Rat   960 -----ALDLTSSHAEKI-IKEDSLG-----ILFP-FRDRGKFKNTACDICGKTFACQSALDIHYR 1012

  Fly  1049 SHTGEKPYKCELCSYACAQSSKLTRHMKTHGRTGKDVYRCRFCDMPFSVPSTLEKHMRKCVVNQG 1113
            |||.|:|:.|.:||...:....|.:||.||...              .:||.|.:.......||.
  Rat  1013 SHTKERPFICTVCSRGFSTKGNLKQHMLTHQMR--------------DLPSQLFEPSSNLGPNQN 1063

  Fly  1114 KAAAAANA--------------VAAAQAAQAAAQHIQAAAQQAQAVQAQAVQAQAAQQSQQ 1160
            .|...|::              |:...:..|...|:.:....:.|.....:.|...:..:|
  Rat  1064 SAMIPASSLSSLIKTEVNGFVHVSPQDSKDAPTSHVPSGPLSSSATSPVLLPALPRRTPKQ 1124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CphNP_001356899.1 zf-C2H2 717..739 CDD:395048 5/21 (24%)
C2H2 Zn finger 719..739 CDD:275368 5/19 (26%)
zf-H2C2_2 731..756 CDD:463886 12/24 (50%)
C2H2 Zn finger 747..767 CDD:275368 4/19 (21%)
zf-C2H2 1029..1050 CDD:395048 9/20 (45%)
C2H2 Zn finger 1030..1050 CDD:275368 9/19 (47%)
zf-H2C2_2 1042..1067 CDD:463886 11/24 (46%)
C2H2 Zn finger 1058..1078 CDD:275368 6/19 (32%)
C2H2 Zn finger 1088..1106 CDD:275368 3/17 (18%)
Sall1NP_001100885.2 SUF4-like 442..529 CDD:411020 11/86 (13%)
C2H2 Zn finger 445..466 CDD:411020 4/20 (20%)
C2H2 Zn finger 445..465 CDD:275368 3/19 (16%)
C2H2 Zn finger 473..493 CDD:411020 2/19 (11%)
C2H2 Zn finger 473..493 CDD:275368 2/19 (11%)
C2H2 Zn finger 699..719 CDD:275368 5/19 (26%)
zf-H2C2_2 711..736 CDD:463886 12/24 (50%)
C2H2 Zn finger 727..747 CDD:275368 4/19 (21%)
zf-C2H2 757..779 CDD:395048 4/21 (19%)
C2H2 Zn finger 759..779 CDD:275368 4/19 (21%)
C2H2 Zn finger 994..1014 CDD:275370 9/19 (47%)
SUF4-like 997..>1041 CDD:411020 19/43 (44%)
C2H2 Zn finger 997..1015 CDD:411020 9/17 (53%)
zf-C2H2 1020..1042 CDD:395048 6/21 (29%)
C2H2 Zn finger 1022..1042 CDD:275370 6/19 (32%)
C2H2 Zn finger 1022..1041 CDD:411020 6/18 (33%)
lambda-1 1055..>1146 CDD:212564 10/70 (14%)
SUF4-like 1125..>1172 CDD:411020 261/1296 (20%)
C2H2 Zn finger 1127..1148 CDD:411020
C2H2 Zn finger 1127..1147 CDD:275368
C2H2 Zn finger 1155..1175 CDD:275368
C2H2 Zn finger 1155..1172 CDD:411020
Blue background indicates that the domain is not in the aligned region.

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