DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cph and sall1

DIOPT Version :10

Sequence 1:NP_001356899.1 Gene:Cph / 31660 FlyBaseID:FBgn0029939 Length:1254 Species:Drosophila melanogaster
Sequence 2:NP_001090646.1 Gene:sall1 / 100036618 XenbaseID:XB-GENE-491393 Length:1330 Species:Xenopus tropicalis


Alignment Length:1488 Identity:289/1488 - (19%)
Similarity:456/1488 - (30%) Gaps:514/1488 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 SHSDSTENDAV----ATQDILTCG-ACQKAFALSDIVKFIQHKVLQCNKENYGQCATQNPQMDRD 77
            :|..:||...:    ..::...|. .|.:.|.|||:   :||| ..|.|........:||....:
 Frog    53 NHERNTERGQIHRTPKNKEAHVCSRCCAEFFELSDL---LQHK-KNCTKNQLVLIVNENPPPPAE 113

  Fly    78 AEEGRPLSLVNRRPSISAPISGRKSAPASAAAAVAAAAAAAAAAAAASSTASGSRIHTPPPSPAD 142
            |....|.| .|....::..::....|..|                                   |
 Frog   114 ASSPIPPS-DNPDEHMNDTVNNSDQADCS-----------------------------------D 142

  Fly   143 LLADGASSTPKRLVDENDNTTPKDSETGATTLDSNAAPSSPAAIERQSSGDSSCEMEEQQDR--- 204
            |...|....|    |:.::...:.|||..::..||...:..::....:.|.|:......|.|   
 Frog   143 LSEHGEHGKP----DKEESMEVEFSETNNSSSGSNKVDNGDSSSNNPTLGTSAITTSLPQVRDLT 203

  Fly   205 --------------QDKQS-QPKQAKVKQEPYDEEGVNHHQNQDDDDDEEMEERSLAKRPKME-L 253
                          ::.|| :...|:..||...:...|:               .||....|| |
 Frog   204 ALGNFSMINSNVIIENLQSTRVAVAQFSQEAKTKGAANN---------------KLAVPALMEQL 253

  Fly   254 VDAEANTVHTEPSNYTCSTCKTRYTSAWRLIQHVQH------SHGVKIYVESPG-GGATLTVATP 311
            :..:...:|                 ...||:.::|      |....:...:.| .||....|||
 Frog   254 LALQQQQIH-----------------QLHLIEQIRHQILLLASQSADMPTSASGPQGALRVSATP 301

  Fly   312 AALNNSALALAAAAAAASASGLASPQPAVS------------PNPAVT-SSAKRSSP-LGAAGST 362
            ....:|.|:...||||..|..|||...::|            .||..| .|...||| :.|..||
 Frog   302 LTTLSSHLSQQLAAAAGLAQSLASQSASISGMKQLPPIQLPQSNPVNTVPSISSSSPNMNALAST 366

  Fly   363 ILSTSVSSTCSNSLVNTSGGS-ISN------------TSSIGSPQQQQLQLQQQQAQQQQQRVQQ 414
            :.|.|     |:.:.:::||| :||            .||:.||..                   
 Frog   367 VTSPS-----SDKVPSSTGGSQVSNPPAPVTSSPAFAISSLLSPAS------------------- 407

  Fly   415 QQRENLASAMAAGMRHHPLLPPPEAMHANPFQLLRMPLPPALAQAGNVVPTVAPL-FGRPSPADH 478
                            :||||.| |.:..||       |..|...|.....:..| ..:|.....
 Frog   408 ----------------NPLLPQP-APNTTPF-------PGTLPSIGTTAEDLNSLRKSKPPSVTA 448

  Fly   479 YRMEQLVSEQFRHHGFNLAA-------------AAAAAQAQFNANGQVVGGVVSGSG-------- 522
            :..:....|.|..|.....|             .:...:..|..|  :.|...|..|        
 Frog   449 FETKSTSDEAFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFKCN--ICGNRFSTKGNLKVHFQR 511

  Fly   523 ----------EPRPPSS------SSSGSQRG-SVPP----------------------AALPP-- 546
                      .|.|...      :|:|...| |:||                      ..|||  
 Frog   512 HKEKYPHIQMNPYPVPEHLDNIPTSTGIPYGMSIPPEKPVTNWLDTKPVLPTLTTSVGMPLPPTI 576

  Fly   547 PSLSSQQQQQQQQAVQQQQQQGAQQQLQSAQQQQQSQQQSQQQQQITPGLVGGAGGSLKL--EPQ 609
            |:|:|..:.::.|.:      .......|.....:|:..::...:.|..|...|..::.:  :.:
 Frog   577 PTLTSFIKTEEPQPI------AISHPTASPPDSVKSETATEPLLKKTSDLPDEAEAAMPILDKEE 635

  Fly   610 QMDFYSQRLRQL-AGTTSPGAGSTVNSSSPSPRQKQSPHFASPSPSQQQQQQLATIPRPHSLTPP 673
            |....|..::.| ....||..||.:::|.|:|        ..|..|:|.:.:.          |.
 Frog   636 QQSQNSDCIQNLNTSACSPTTGSGISASFPNP--------LLPLMSEQFKAKF----------PF 682

  Fly   674 EKLGDA--SSENGSLGLILASTPRSASTPPSKTGDVSLQEPIAHCYSCSYCDKKFRFENNLIIHQ 736
            ..|.|.  :||...|..::.:..:.:|.|                ..|..|.:....::.|.:|.
 Frog   683 GGLLDVAPASETSKLQQLVENIDKKSSDP----------------NECVICRRVLSCQSALKMHY 731

  Fly   737 RTHTGEKPYKCTAC-------------------------DFECSHIQK-------LMKHMRVH-- 767
            ||||||:|:||..|                         ...|...||       |.:|:|:|  
 Frog   732 RTHTGERPFKCKICGRAFTTKGNLKTHYSVHRAMPPLRVQHSCPICQKKFTNAVVLQQHIRMHMG 796

  Fly   768 ---------RSPADDQDNQDNQDDGSNADSLETNEADNDED----------PNPDESEEELGDGD 813
                     .|..|..::.....|....|.|:....:|.||          .:.|.|::.|....
 Frog   797 GQIPNTPIAESYPDSMESDTGSFDEKTIDDLDNFSDENMEDCPDSSVPDTPKSVDASQDSLSSSP 861

  Fly   814 NDPD-----------------------------GDGDLDGEDEDEDELEECEDMD---------- 839
            ..|:                             .:|.::|:....|......||:          
 Frog   862 LPPEVSSITALENQMKLINAGLAEQLQASLKSTENGSIEGDGMTNDSSSLGGDMESQSAGSPAAS 926

  Fly   840 ---YKAEDLSVSNRIDGKSQSPKT--------------------TSSGATSLVGELMDKF----G 877
               |....||.||..:...:||.|                    .:.||..|.....||.    .
 Frog   927 ESTYSMHALSPSNSTNDYLKSPNTDEKIHRALSLDPTSGLSPTPANGGALDLTSSNTDKVIKDEH 991

  Fly   878 LSNIAQYSE--AYKQALQESGRKEAAAAAAAAAAAADNN----------NRGGAGAPLSDKLNGL 930
            |..:..:.|  .||..:.:...|..|..:|.......:.          |||     .|.|.|  
 Frog   992 LGVLFPFRERGKYKNTICDICGKTFACQSALDIHYRSHTKERPFICTVCNRG-----FSTKGN-- 1049

  Fly   931 PVAALRLRDEFAKNCNMFQQPQDGGAPSQVPLFNP----FPNPF-------ELSKRMKMD-GGDW 983
                       .|...:..|.:|  .|||  ||.|    .|.|.       .|:..:|.: .|..
 Frog  1050 -----------LKQHMLTHQMRD--LPSQ--LFEPSSSMTPTPTVPSTPTNPLATIIKTEFNGFM 1099

  Fly   984 WGMSQALHRNEALFENLKLKPLGLGGANSL-------IQGPLLKKESRQRNDTCEFCGKVFKNCS 1041
            .|.||          ::|.:|..:..:.||       :..|.|.:.:.::: .|..|||.|.:.|
 Frog  1100 HGSSQ----------DIKEQPTNIVSSGSLPSSATSPVLLPALARRTPKQH-YCNACGKSFSSSS 1153

  Fly  1042 NLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRTGKDVYRCRFCDM----------PFS 1096
            .|.:|.|:||||||:.|.:|..|......|..||.||........|.|...:          |..
 Frog  1154 ALQIHERTHTGEKPFACTICGRAFTTKGNLKVHMGTHMWNSTPARRGRRLSVDGPMAFLGGNPVK 1218

  Fly  1097 VPSTLEKHMRKCVVNQGKAAAAANAVAAA---QAAQAAAQHIQAAAQQAQAVQAQAVQAQAAQQS 1158
            .|...:|.:         ...|.||..::   |.|.|.:..:.....:...:|...:...|..  
 Frog  1219 FPEMFQKDL---------GTRAGNADPSSFWNQYAAALSNGLAMKTNEISVIQNGGITPMAGS-- 1272

  Fly  1159 QQQQQQLSPMGVVGYPPQFVSGHNLSLPGSVSGDNDSNASSSMTGVHPISLKEEAXLF 1216
                     :|..|..|  :||    |.||:....:|..::.:.|:..::..|....|
 Frog  1273 ---------LGNGGSSP--ISG----LTGSLEKLQNSEPNAPLAGLEKLASSENGTSF 1315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CphNP_001356899.1 zf-C2H2 717..739 CDD:395048 5/21 (24%)
C2H2 Zn finger 719..739 CDD:275368 5/19 (26%)
zf-H2C2_2 731..756 CDD:463886 13/49 (27%)
C2H2 Zn finger 747..767 CDD:275368 8/51 (16%)
zf-C2H2 1029..1050 CDD:395048 9/20 (45%)
C2H2 Zn finger 1030..1050 CDD:275368 9/19 (47%)
zf-H2C2_2 1042..1067 CDD:463886 12/24 (50%)
C2H2 Zn finger 1058..1078 CDD:275368 6/19 (32%)
C2H2 Zn finger 1088..1106 CDD:275368 4/27 (15%)
sall1NP_001090646.1 PRK10856 <326..>438 CDD:236776 34/159 (21%)
SUF4-like 461..543 CDD:411020 11/83 (13%)
C2H2 Zn finger 464..485 CDD:411020 1/20 (5%)
C2H2 Zn finger 464..484 CDD:275368 1/19 (5%)
C2H2 Zn finger 492..512 CDD:411020 4/21 (19%)
C2H2 Zn finger 492..512 CDD:275368 4/21 (19%)
C2H2 Zn finger 714..734 CDD:275368 5/19 (26%)
zf-H2C2_2 726..751 CDD:463886 12/24 (50%)
C2H2 Zn finger 742..762 CDD:275368 2/19 (11%)
zf-C2H2 772..794 CDD:395048 6/21 (29%)
C2H2 Zn finger 774..794 CDD:275368 6/19 (32%)
C2H2 Zn finger 1009..1029 CDD:275370 3/19 (16%)
SUF4-like 1012..>1056 CDD:411020 10/61 (16%)
C2H2 Zn finger 1012..1030 CDD:411020 3/17 (18%)
zf-C2H2 1035..1057 CDD:395048 7/39 (18%)
C2H2 Zn finger 1037..1057 CDD:275370 7/37 (19%)
C2H2 Zn finger 1037..1056 CDD:411020 7/36 (19%)
SUF4-like 1140..>1187 CDD:411020 19/47 (40%)
C2H2 Zn finger 1142..1163 CDD:411020 9/20 (45%)
C2H2 Zn finger 1142..1162 CDD:275368 9/19 (47%)
C2H2 Zn finger 1170..1190 CDD:275368 6/19 (32%)
C2H2 Zn finger 1170..1187 CDD:411020 4/16 (25%)

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