DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4617 and Hmgxb4

DIOPT Version :9

Sequence 1:NP_001259308.1 Gene:CG4617 / 31657 FlyBaseID:FBgn0029936 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_821136.1 Gene:Hmgxb4 / 70823 MGIID:1918073 Length:594 Species:Mus musculus


Alignment Length:428 Identity:114/428 - (26%)
Similarity:177/428 - (41%) Gaps:142/428 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SPTSHLVAKDFQVTGVSRSGRVRKKSSKLLDFESPDEIEKRTRRHSGA-RQPARYSGRGRPSNAL 66
            |....|.|.:..:....|..:.:|||.|  ..:..|:...:.:|||.. |..||..|..|     
Mouse   297 SSAGELEAGELVIDDSYREIKKKKKSKK--SKKKKDKDRHKEKRHSRTKRSSAREHGTAR----- 354

  Fly    67 RDLDLDQEMLVDDGIISDSEEFHPDTTATVVAI----LNSDDELDNLVQDIVDGVQAEATSQESS 127
                       :.|:|       |...::|..:    |::|..                      
Mouse   355 -----------EHGLI-------PGPASSVPTLPLPALHTDGH---------------------- 379

  Fly   128 VRQSLYMREKSNKRQVLKDGKVVSAKVQRKDKG----KQRYTAYSLWAKEARQKDLQD---LDFT 185
                   .||..||:         .|.:.:::|    |:..:||.::.||.|...:.|   :||.
Mouse   380 -------GEKKKKRE---------DKDRDRERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFG 428

  Fly   186 SATRRLSELWANVSNRDKNTWRRKAKIEASRAKTRDKTAANGATQPASNGSTALADATQHETIFQ 250
            ..:::|:|:|..:..:||..|::||:.                              .||:   |
Mouse   429 ELSKKLAEVWKQLPEKDKLIWKQKAQY------------------------------LQHK---Q 460

  Fly   251 NRATTSRTRKLAADRQQSSIEAAAAAAAAAATGTNTQRRSISTRSARSQVSKSATKQAQVHTDAD 315
            |:|..:..:     |:.||.|.:....|::....:.|::|..|...                   
Mouse   461 NKAEATTVK-----RKASSAEGSMKVRASSVGVLSPQKKSPPTTML------------------- 501

  Fly   316 VSGRTGGQLKQEEVQKTSIEVIDAAAHLKLLGESLTVIGERLKKHNGYVALSGSLSVLLDSLLCA 380
                    |.....:....|.||.||||:||||||::||.||::..|.||:||||||||||::||
Mouse   502 --------LPASPAKAPETEPIDVAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLLDSIICA 558

  Fly   381 MGPLLCMTTQIPGMENNVQLSKNLADTLDNIAYVMPGL 418
            :|||.|:|||:|  |.|....:.|::|||||||:||||
Mouse   559 LGPLACLTTQLP--ELNGCPKQVLSNTLDNIAYIMPGL 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4617NP_001259308.1 HMG-box 165..218 CDD:238037 16/55 (29%)
Hmgxb4NP_821136.1 DUF4171 107..225 CDD:290491
HMG-box 400..463 CDD:238037 21/95 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0008243
OrthoInspector 1 1.000 - - oto94752
orthoMCL 1 0.900 - - OOG6_109229
Panther 1 1.100 - - LDO PTHR46584
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5833
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.940

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