DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4617 and hmgxb4a

DIOPT Version :10

Sequence 1:NP_572383.1 Gene:CG4617 / 31657 FlyBaseID:FBgn0029936 Length:418 Species:Drosophila melanogaster
Sequence 2:XP_005163967.1 Gene:hmgxb4a / 559742 ZFINID:ZDB-GENE-070912-675 Length:632 Species:Danio rerio


Alignment Length:427 Identity:121/427 - (28%)
Similarity:184/427 - (43%) Gaps:122/427 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ESPTSHLVAKDFQVTGVSRSGRVRKKSSKLLDFESPDEIEK--RTRRHSGARQPARYSGRGRPSN 64
            |.....||..| ..|.:|:..:..|||.|..|.|...:.||  |.::||......:.|.:|    
Zfish   318 ELEAGELVIDD-SYTRLSKKKKKSKKSKKKKDKERDRDREKGSREKKHSKGGSGGKKSSQG---- 377

  Fly    65 ALRDLDLDQEMLVDDGIISDSEEFHPDTTATVVAILNSDDELDNLVQDIVDGVQAEATSQESSVR 129
                               |....|..|.       :|.:...:      .|:...|....|...
Zfish   378 -------------------DQPRSHSHTH-------SSSNHSSS------GGMYPMAPPTSSHQH 410

  Fly   130 QSL-YMREKSNKRQVLKDGKVVSAKVQRKDKGKQR-YTAYSLWAKEAR---QKDLQDLDFTSATR 189
            ||: .:.||..|::..:..|      ..|||.|:: .|||.::.||.|   ..:...|.|...::
Zfish   411 QSIELIGEKKKKKEEKERDK------HDKDKPKKKNMTAYQVFCKEYRVNINAEQPGLVFGELSK 469

  Fly   190 RLSELWANVSNRDKNTWRRKAKIEASRAKTRDKTAANGATQPASNGSTALADATQHETIFQNRAT 254
            :|:|:|..:..:||..||:||:.                              .||:   ||:| 
Zfish   470 KLAEVWKQLPEKDKLVWRQKAQY------------------------------LQHK---QNKA- 500

  Fly   255 TSRTRKLAADRQQSSIEAAAAAAAAAATGTNTQRRSISTRSARSQVSKSATKQAQVHTDADVSGR 319
                            ||           ...:|::::|..::   ||.::|...:.:.....||
Zfish   501 ----------------EA-----------MTVKRKTLTTSDSK---SKGSSKAFSLGSGLAPQGR 535

  Fly   320 TGGQLKQEEVQKTSIEVIDAAAHLKLLGESLTVIGERLKKHNGYVALSGSLSVLLDSLLCAMGPL 384
            :...:.....:...::.|||||||:||||||::||.||::..|.||:||||||||||:|||:|||
Zfish   536 SSLGMSLSPARVPDVDPIDAAAHLQLLGESLSLIGHRLQETEGMVAVSGSLSVLLDSILCALGPL 600

  Fly   385 LCMTTQIP---GMENNVQLSKNLADTLDNIAYVMPGL 418
            .|:|.|:|   |...|:     |::|||||||:||||
Zfish   601 TCLTAQVPQLNGCPRNI-----LSNTLDNIAYIMPGL 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4617NP_572383.1 HMG-box_SF 165..216 CDD:438789 17/53 (32%)
hmgxb4aXP_005163967.1 DUF4171 124..262 CDD:463979
HMG-box_HMGXB4 440..497 CDD:438798 19/89 (21%)
Blue background indicates that the domain is not in the aligned region.

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