DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4617 and Ssrp

DIOPT Version :9

Sequence 1:NP_001259308.1 Gene:CG4617 / 31657 FlyBaseID:FBgn0029936 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_523830.2 Gene:Ssrp / 37767 FlyBaseID:FBgn0010278 Length:723 Species:Drosophila melanogaster


Alignment Length:372 Identity:72/372 - (19%)
Similarity:141/372 - (37%) Gaps:75/372 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MESPTSHLVAKDFQVTGVSRSGRVRKKSSKLLDFE-----------SPDEIEKRTRRHSGARQPA 54
            :..|..|:..::......:|||    .|::..|||           |..|.|:..:......|..
  Fly   362 IHKPPLHIRFEEISSVNFARSG----GSTRSFDFEVTLKNGTVHIFSSIEKEEYAKLFDYITQKK 422

  Fly    55 RY-SGRGRPSNALRDLDL---------------------DQEMLVDDGII---SDSEEFHPDTTA 94
            .: |..|:..:..:|:|.                     ::|...|||..   |..|:|.|:...
  Fly   423 LHVSNMGKDKSGYKDVDFGDSDNENEPDAYLARLKAEAREKEEDDDDGDSDEESTDEDFKPNENE 487

  Fly    95 TVVA-------ILNSDDELDNLVQDIVDGVQAEATSQESSVRQSLYMREKSNKRQVLKDGKVVSA 152
            :.||       ..:|||:.|      ..|...::...:....:....:||..|:...|:.....:
  Fly   488 SDVAEEYDSNVESDSDDDSD------ASGGGGDSDGAKKKKEKKSEKKEKKEKKHKEKERTKKPS 546

  Fly   153 KVQRKDKGKQR--YTAYSLWAKEARQ---KDLQDLDFTSATRRLSELWANVSNRDKNTWRRKAKI 212
            | ::||.||.:  .||:.||..:.|:   ::...:..|...::..|:|..:  :||:.|...|..
  Fly   547 K-KKKDSGKPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL--KDKSKWEDAAAK 608

  Fly   213 EASR--AKTRD-KTAANGATQPASNGSTALADATQHETIFQNRATTS----RTRKLAADRQQSSI 270
            :..|  .:.|: |..|.|.:.....|.::....|:...  ..:|.||    ::::..:|...:|.
  Fly   609 DKQRYHDEMRNYKPEAGGDSDNEKGGKSSKKRKTEPSP--SKKANTSGSGFKSKEYISDDDSTSS 671

  Fly   271 EAAAAAAAAAATGTNTQRRSISTRSARSQVSKSATKQAQVHTDADVS 317
            :.......|     ..:.:..|...|:.:.:||.::..:...|::.|
  Fly   672 DDEKDNEPA-----KKKSKPPSDGDAKKKKAKSESEPEESEEDSNAS 713

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4617NP_001259308.1 HMG-box 165..218 CDD:238037 13/57 (23%)
SsrpNP_523830.2 POB3 20..499 CDD:227494 27/140 (19%)
SSrecog 75..284 CDD:281523
PH2_SSRP1-like 332..427 CDD:270051 13/68 (19%)
HMG_box 557..620 CDD:278906 14/64 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45449367
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.