DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4617 and hmg-3

DIOPT Version :9

Sequence 1:NP_001259308.1 Gene:CG4617 / 31657 FlyBaseID:FBgn0029936 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_491688.1 Gene:hmg-3 / 172250 WormBaseID:WBGene00001973 Length:689 Species:Caenorhabditis elegans


Alignment Length:309 Identity:72/309 - (23%)
Similarity:121/309 - (39%) Gaps:51/309 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 DFQV---TGVSR--SGRVRKKSSKLLDFESPDEIEKRTRRHSGARQPARY--------------- 56
            ||::   ||.|.  |...:::::||.|:.:..||:.| ..|....:.|.|               
 Worm   392 DFEIDLKTGSSLTFSAMDKEENNKLFDYLNKKEIKIR-NSHRIDNKSAGYGSSDEDDIDPYKSTV 455

  Fly    57 SGRGRPSNALRDLDLDQEMLVDD-GIISDSEEFHPDTTATVVAILNSDDELDNLVQDIVDGVQAE 120
            ...||.    :|.|.|.|...:| .:..|.::...|..::..:....|||.|:..:....|....
 Worm   456 KAEGRE----QDDDSDDESTDEDYDLDKDMKKQKNDKDSSEGSGSEPDDEYDSGSEKDASGTGES 516

  Fly   121 ATSQESSVRQSLYMREKSNKRQVLKDGKVVSAKVQRKDK-------GKQRYTAYSLWAKEARQKD 178
            ...:|:...:....:||.|||:  |..|.|..|..:|.|       .|:..|||.:|....|...
 Worm   517 DPDEENIEPKKKESKEKKNKRE--KKEKPVKEKAVKKGKKTKDPNEPKRATTAYIIWFNANRNSM 579

  Fly   179 LQDLD-FTSATRRLSELWANVSNRDKNTWRRKAKIEASR--AKTRDKTAANGATQPASNGSTALA 240
            .:|.| .....::....|.::|..||..|..||..:.:|  |:.::.....|..:.||..||..:
 Worm   580 KEDGDTLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEYKKNGGGVEKASGPSTKKS 644

  Fly   241 DATQHETIFQNRATTSRT------RKLAADRQQSSIEAAAAAAAAAATG 283
            ........|:::...|.|      ..|.|.:.:|.       ||:.::|
 Worm   645 SDQSPGKQFKSKEHISDTDDSDDDEPLKAKKDESD-------AASESSG 686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4617NP_001259308.1 HMG-box 165..218 CDD:238037 15/55 (27%)
hmg-3NP_491688.1 POB3 20..497 CDD:227494 24/109 (22%)
SSrecog 75..285 CDD:281523
PH2_SSRP1-like 332..429 CDD:270051 12/37 (32%)
HMGB-UBF_HMG-box 561..624 CDD:238686 17/62 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160160099
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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