DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4615 and Mmd2

DIOPT Version :9

Sequence 1:NP_572382.1 Gene:CG4615 / 31656 FlyBaseID:FBgn0029935 Length:313 Species:Drosophila melanogaster
Sequence 2:NP_001032294.1 Gene:Mmd2 / 304301 RGDID:1306506 Length:247 Species:Rattus norvegicus


Alignment Length:234 Identity:103/234 - (44%)
Similarity:131/234 - (55%) Gaps:28/234 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 YQPTEIEQVANVITHGIWILPAVFAAIKLFERSSSASQYLVAWVYGGALCMLFTVSTFFHCSCYC 143
            |:|||.|..||..||..||:|::..:..|:..|....:.:.||:||..||.||.|||.||...:.
  Rat    29 YRPTEYEHAANCATHAFWIIPSILGSSNLYFLSDDDWETISAWIYGLGLCGLFVVSTIFHTVSWK 93

  Fly   144 AEHKPPKNVKAWPCLGWQTYQGLKNVLHRCDRAMIYVFIAGSYFPWLTLEN----TDHSAILFCM 204
            ..|                .:.:::.||..||.:||.|||.||.|||.|..    ..|      |
  Rat    94 KSH----------------LRMVEHCLHMIDRMVIYFFIAASYAPWLNLRELGPWASH------M 136

  Fly   205 EWVIWLMAGIGIAYQQVFHERYKCLETFFYLVMGLGPALVVVFTGHHFHGMMQLKFGGGFYILGI 269
            .|::|:||.||..|...||||||.:|...|:|||..||||:: :..:..|:.:|..||.||.||:
  Rat   137 RWLVWIMASIGTVYVFFFHERYKLVELLCYVVMGFFPALVIL-SMPNTEGIWELMTGGAFYCLGM 200

  Fly   270 VFFKADGTIPMAHAIWHLFVVLAAGCHYYAILVNLY-PS 307
            ||||:||.||.|||||||||...||.|||||...|| ||
  Rat   201 VFFKSDGRIPFAHAIWHLFVAFGAGTHYYAIWRYLYLPS 239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4615NP_572382.1 hlyIII 85..304 CDD:273425 95/222 (43%)
Mmd2NP_001032294.1 HlyIII 35..235 CDD:413828 95/222 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 138 1.000 Domainoid score I4729
eggNOG 1 0.900 - - E1_COG1272
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 191 1.000 Inparanoid score I3784
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1487730at2759
OrthoFinder 1 1.000 - - FOG0003169
OrthoInspector 1 1.000 - - otm46270
orthoMCL 1 0.900 - - OOG6_103941
Panther 1 1.100 - - LDO PTHR20855
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2564
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.830

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