DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cht11 and lmd-5

DIOPT Version :10

Sequence 1:NP_572361.1 Gene:Cht11 / 31630 FlyBaseID:FBgn0029913 Length:432 Species:Drosophila melanogaster
Sequence 2:NP_001309512.1 Gene:lmd-5 / 187942 WormBaseID:WBGene00020141 Length:1518 Species:Caenorhabditis elegans


Alignment Length:369 Identity:93/369 - (25%)
Similarity:182/369 - (49%) Gaps:51/369 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 GQRLVCYYASDGTHNLSLLDVPGDLCTH-------------INIGPATLDNATIVLPDTLRQVLQ 117
            |:|:|.||...|...::...:  ...||             :..||.:.|       |...|..:
 Worm   989 GKRIVGYYTGWGEREITENQL--KKLTHVIFAFVAMYADGSVKFGPVSAD-------DPGPQAGK 1044

  Fly   118 NDTRSF-------RAAHPQVHLLLWIGGADSGRSFALMVANHAMRKLFLRSLREILRTYPSLDGI 175
            ...|.|       ||.:..|.:|..:||.|:.:.|:.:.|:...|:.|:.|:...:. :..:||:
 Worm  1045 KAERRFVDMKKKARAVNSGVRVLFAVGGWDNSQYFSSVAADSGKRRNFVDSVASFIE-HHKIDGV 1108

  Fly   176 DLDWEFPSAYDRERMHLSQLLYEIRTEW-----RREKRTNDILSLAVAAPEGIAFYAYDIREINL 235
            |||||:|.....::.:...|:.|:|..:     |..::...:::||.||.|......||::.|..
 Worm  1109 DLDWEYPEMKGGDKQNHVTLIRELRERFNGMASRNNRKDPYLITLASAAGEWNLREGYDLKGILN 1173

  Fly   236 YADYVNLMSYDFHFYREDT--PFTGLNAPLYARSQERSLMATFNINYTVQWWLKSGLEPQRLVVG 298
            |||::|:|:||::...|..  .:||..||||..|. :......|.:::::::..:..:|.:|.:|
 Worm  1174 YADFINVMTYDYYGAWESKWGAYTGTPAPLYFGSL-KGFSGKLNADFSMKFYACNTKKPSQLTMG 1237

  Fly   299 LPTYGHSF-TLVNPLN-----HRIGAPASGYGKCGQLGFTTLTETCECVTKFFKPNLSYDAESCS 357
            :|.||..: .::.|::     .|..||.:|..:.|.:|:..|.:     ..:.|.:.::..::.:
 Worm  1238 VPFYGRYWKNVLEPIDASDNMWRTAAPQNGKYEGGYVGWRNLEK-----EGWNKGSATWHKKTKT 1297

  Fly   358 PYL--SALQEWISYENQTSIACKANYVKSLNLGGVMVFSLNTDD 399
            ||:  :..:.::.:||:.|:..|.:|..:.||||:|:::|:.||
 Worm  1298 PYIMNNGARMFLGFENERSLKEKMDYATNRNLGGLMIWALDLDD 1341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht11NP_572361.1 Glyco_18 68..398 CDD:214753 90/364 (25%)
lmd-5NP_001309512.1 LysM 22..65 CDD:197609
LysM 77..120 CDD:197609
LysM 151..194 CDD:197609
LysM 220..260 CDD:197609
LysM 275..312 CDD:197609
LysM 386..429 CDD:197609
Self-incomp_S1 851..940 CDD:461784
Glyco_18 991..1336 CDD:214753 89/360 (25%)
ChtBD1_GH18_2 1388..1435 CDD:211315
ChtBD1_GH18_2 1462..1513 CDD:211315
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.