DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cht11 and lmd-5

DIOPT Version :9

Sequence 1:NP_572361.1 Gene:Cht11 / 31630 FlyBaseID:FBgn0029913 Length:432 Species:Drosophila melanogaster
Sequence 2:NP_001309512.1 Gene:lmd-5 / 187942 WormBaseID:WBGene00020141 Length:1518 Species:Caenorhabditis elegans


Alignment Length:369 Identity:93/369 - (25%)
Similarity:182/369 - (49%) Gaps:51/369 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 GQRLVCYYASDGTHNLSLLDVPGDLCTH-------------INIGPATLDNATIVLPDTLRQVLQ 117
            |:|:|.||...|...::...:  ...||             :..||.:.|       |...|..:
 Worm   989 GKRIVGYYTGWGEREITENQL--KKLTHVIFAFVAMYADGSVKFGPVSAD-------DPGPQAGK 1044

  Fly   118 NDTRSF-------RAAHPQVHLLLWIGGADSGRSFALMVANHAMRKLFLRSLREILRTYPSLDGI 175
            ...|.|       ||.:..|.:|..:||.|:.:.|:.:.|:...|:.|:.|:...:. :..:||:
 Worm  1045 KAERRFVDMKKKARAVNSGVRVLFAVGGWDNSQYFSSVAADSGKRRNFVDSVASFIE-HHKIDGV 1108

  Fly   176 DLDWEFPSAYDRERMHLSQLLYEIRTEW-----RREKRTNDILSLAVAAPEGIAFYAYDIREINL 235
            |||||:|.....::.:...|:.|:|..:     |..::...:::||.||.|......||::.|..
 Worm  1109 DLDWEYPEMKGGDKQNHVTLIRELRERFNGMASRNNRKDPYLITLASAAGEWNLREGYDLKGILN 1173

  Fly   236 YADYVNLMSYDFHFYREDT--PFTGLNAPLYARSQERSLMATFNINYTVQWWLKSGLEPQRLVVG 298
            |||::|:|:||::...|..  .:||..||||..|. :......|.:::::::..:..:|.:|.:|
 Worm  1174 YADFINVMTYDYYGAWESKWGAYTGTPAPLYFGSL-KGFSGKLNADFSMKFYACNTKKPSQLTMG 1237

  Fly   299 LPTYGHSF-TLVNPLN-----HRIGAPASGYGKCGQLGFTTLTETCECVTKFFKPNLSYDAESCS 357
            :|.||..: .::.|::     .|..||.:|..:.|.:|:..|.:     ..:.|.:.::..::.:
 Worm  1238 VPFYGRYWKNVLEPIDASDNMWRTAAPQNGKYEGGYVGWRNLEK-----EGWNKGSATWHKKTKT 1297

  Fly   358 PYL--SALQEWISYENQTSIACKANYVKSLNLGGVMVFSLNTDD 399
            ||:  :..:.::.:||:.|:..|.:|..:.||||:|:::|:.||
 Worm  1298 PYIMNNGARMFLGFENERSLKEKMDYATNRNLGGLMIWALDLDD 1341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht11NP_572361.1 Glyco_18 68..398 CDD:214753 90/364 (25%)
GH18_chitinase-like 69..428 CDD:299167 91/366 (25%)
lmd-5NP_001309512.1 LysM 22..65 CDD:197609
LysM 77..120 CDD:197609
LysM 151..194 CDD:197609
LysM 220..260 CDD:197609
LysM 275..312 CDD:197609
LysM 386..429 CDD:197609
Self-incomp_S1 851..944 CDD:283566
Glyco_18 991..1336 CDD:214753 89/360 (25%)
GH18_chitinase-like 992..1336 CDD:299167 88/359 (25%)
ChtBD1_GH18_2 1388..1435 CDD:211315
ChtBD1_GH18_2 1462..1513 CDD:211315
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3325
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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