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Protein Alignment Cht11 and Chia

DIOPT Version :9

Sequence 1:	NP_572361.1	Gene:	Cht11 / 31630	FlyBaseID:	FBgn0029913	Length:	432	Species:	Drosophila melanogaster
Sequence 2:	NP_997469.1	Gene:	Chia / 113901	RGDID:	1303058	Length:	473	Species:	Rattus norvegicus

Alignment Length:	400	Identity:	122/400 - (30%)
Similarity:	196/400 - (49%)	Gaps:	50/400 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly    54 LLGIQTGEVHKVGQRLVCYYAS-----DGTHNLSLLDVPGDLCTHINIGPATLDNATIVLPDTLR 113
            ||.:|.|..:    .||||:.:     .|..:....|:...||||:....|.:.|      :.:.
  Rat    13 LLNVQLGSAY----NLVCYFTNWAQYRPGLGSFKPDDINPCLCTHLIYAFAGMQN------NQIT 67

  Fly   114 QVLQNDTRSFRA------AHPQVHLLLWIGGADSGRS-FALMVANHAMRKLFLRSLREILRTYPS 171
            .:..||...::|      .:.::..||.|||.:.|.: |..||:....|:.|:.|:.:.||.| .
  Rat    68 TIEWNDVTLYKAFNDLKNRNSKLKTLLAIGGWNFGTAPFTTMVSTSQNRQTFITSVIKFLRQY-G 131

  Fly   172 LDGIDLDWEFPSAYDR--ERMHL-SQLLYEIRTEWRRE----KRTNDILSLAVAAPEGIAFYAYD 229
            .||:|||||:|.:...  :..|| :.|:.|:|..:.:|    .|...:::.||||........|:
  Rat   132 FDGLDLDWEYPGSRGSPPQDKHLFTVLVKELREAFEQEAIESNRPRLMVTAAVAAGISNIQAGYE 196

  Fly   230 IREINLYADYVNLMSYDFHFYREDTPFTGLNAPLYARSQERSLMATFNINYTVQWWLKSGLEPQR 294
            |.|::.|.|::::|:||.|...:.  :||.|:|||....|....|..|::|.:.:|..:|...::
  Rat   197 IPELSQYLDFIHVMTYDLHGSWDG--YTGENSPLYKLPTETGSNAYLNVDYVMNYWKDNGAPAEK 259

  Fly   295 LVVGLPTYGHSFTLVNPLNHRIGAPASGYGKCG----QLGFTTLTETCECVTKFFKPNLS--YDA 353
            |:||.|.|||::.|.||.:..||||.||.|..|    |.||....|.|    .|.:...:  :||
  Rat   260 LIVGFPEYGHTYILSNPSDTGIGAPTSGNGPAGPYTRQAGFWAYYEIC----TFLRNGATQDWDA 320

  Fly   354 ESCSPYLSALQEWISYENQTSIACKANYVKSLNLGGVMVFSLNTDDLKNSCSIMPNLKYSEKPVF 418
            ....||.....||:.|:|..|.:.||.::|..|.||.|:::::.||...|        :.::..|
  Rat   321 PQEVPYAYKGNEWVGYDNIKSFSVKAQWLKQNNFGGAMIWAIDLDDFTGS--------FCDQGKF 377

  Fly   419 PLTQAIKDIL 428
            |||..:...|
  Rat   378 PLTSTLNKAL 387

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.