DRSC/TRiP Functional Genomics Resources

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Protein Alignment mAChR-C and mAChR-A

DIOPT Version :10

Sequence 1:NP_572358.1 Gene:mAChR-C / 31626 FlyBaseID:FBgn0029909 Length:371 Species:Drosophila melanogaster
Sequence 2:NP_523844.2 Gene:mAChR-A / 37892 FlyBaseID:FBgn0000037 Length:805 Species:Drosophila melanogaster


Alignment Length:313 Identity:75/313 - (23%)
Similarity:130/313 - (41%) Gaps:57/313 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TSSSSPA---------------WDYRSSPEALGVV-PFLWQHQNATETPTEITLQATSFGAGHLL 52
            |:::|||               ::..:|..|.|:. |:...:.|.|........:...:....::
  Fly    41 TTTASPAGYSPGYPGTTLLTALFENLTSTAASGLYDPYSGMYGNQTNGTIGFETKGPRYSLASMV 105

  Fly    53 WLA-INAFLFVLILGGNILTIVAVRTCRHLRSVISNLFILSLAVSDFCVG-LALPYHLVFYMGSD 115
            .:. :.|.|..:.:.||::.:::.:..:.|:: |||.|:.|||::||.:| :::|   :|.:.:.
  Fly   106 VMGFVAAILSTVTVAGNVMVMISFKIDKQLQT-ISNYFLFSLAIADFAIGAISMP---LFAVTTI 166

  Fly   116 IGAM-RGPCLLRFFLLI--CACCVSMLTLISIAVDRYIAVVYALHYRRYMTRRVAYSIIIFNWCL 177
            :|.. .||.:...:|.:  .|...|:|.|:.|:.|||.:|...|.||...|...|..:|...|  
  Fly   167 LGYWPLGPIVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTNRAAVMIGAAW-- 229

  Fly   178 GALVALLPVFWNRWPDAQA--------CEFDEVLAPGYIA-GVITPGFVIIWICMFLVYWRIMRE 233
            |..:.|.|.:...||..:.        |....:....||. |.....|......|..:||||.||
  Fly   230 GISLLLWPPWIYSWPYIEGKRTVPKDECYIQFIETNQYITFGTALAAFYFPVTIMCFLYWRIWRE 294

  Fly   234 ASK--------QALRLRQSVVYNTDEATTMRN-----LLL--------HPDWK 265
            ..|        ||.:...|...|:.:..|:.|     ||.        |..|:
  Fly   295 TKKRQKDLPNLQAGKKDSSKRSNSSDENTVVNHASGGLLAFAQVGGNDHDTWR 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mAChR-CNP_572358.1 7tm_classA_rhodopsin-like 53..325 CDD:410626 65/248 (26%)
TM helix 1 53..78 CDD:410626 4/25 (16%)
TM helix 2 86..111 CDD:410626 10/25 (40%)
TM helix 3 123..153 CDD:410626 9/31 (29%)
TM helix 4 166..185 CDD:410626 5/18 (28%)
TM helix 5 204..229 CDD:410626 6/25 (24%)
TM helix 6 261..291 CDD:410626 2/5 (40%)
TM helix 7 300..325 CDD:410626
mAChR-ANP_523844.2 7tmA_mAChR_DM1-like 105..>300 CDD:320428 55/200 (28%)
TM helix 1 106..132 CDD:320428 4/25 (16%)
TM helix 2 139..165 CDD:320428 11/28 (39%)
TM helix 3 177..207 CDD:320428 9/29 (31%)
TM helix 4 219..242 CDD:320428 6/24 (25%)
TM helix 5 265..294 CDD:320428 9/28 (32%)
7tm_GPCRs <707..783 CDD:475119
TM helix 6 716..738 CDD:410628
TM helix 7 751..776 CDD:410628
Blue background indicates that the domain is not in the aligned region.

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