DRSC/TRiP Functional Genomics Resources

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Protein Alignment mAChR-C and pcdr-1

DIOPT Version :9

Sequence 1:NP_572358.1 Gene:mAChR-C / 31626 FlyBaseID:FBgn0029909 Length:371 Species:Drosophila melanogaster
Sequence 2:NP_510580.1 Gene:pcdr-1 / 181656 WormBaseID:WBGene00010329 Length:318 Species:Caenorhabditis elegans


Alignment Length:334 Identity:86/334 - (25%)
Similarity:144/334 - (43%) Gaps:53/334 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 PTEI-TLQATSFGAGHLLWLAINAFLFVLILGGNILTIVAVRTCRHLRSVISNLFILSLAVSDFC 99
            |.:: :|.|.|.|...|: ||::..|||.    :||.|..:.....|..|| ..:::||:|:|..
 Worm     4 PVDVRSLTAESLGRASLI-LAVDLLLFVT----SILNITVIAFTPDLSDVI-GCYLISLSVADLL 62

  Fly   100 VGL-ALPYHLV------FYMGSDIGAMRGPCLLRFFLLICACCVSMLTLISIAVDRYIAVVYALH 157
            ..: .:|..:.      :.:|.|...:   |....:|.|...|.::.|...|.:|||.|::....
 Worm    63 TAIFVIPLSIYSTLEGNWRIGGDNSII---CKSAAYLQIALFCSTVYTFAWICIDRYSAMMKPSR 124

  Fly   158 Y-RRYMTRRVAYSIIIFNW------CLGALVALLPVFWNRWPDAQACEFDEVLAPGYIAGVITPG 215
            | .:.:||...:  |:|:|      |...:||.:.|.:  :||||.|..|......|...::...
 Worm   125 YSEQSLTRCKCW--IVFSWLTSMLLCCPIIVARMQVVF--YPDAQLCVLDWSATSAYSVTLLLLV 185

  Fly   216 FVIIWICMFLVYWRI---MREASKQALRLRQSVVYNTDEATTMRNLLLHPDWKSVQIVVFIMGCF 277
            ||...:.:|...|:|   ||..:  ||...|.::..||.     |.:|         ..|:...|
 Worm   186 FVPTLVTVFNTGWKIWSAMRNPA--ALDDSQRMLVETDP-----NFVL---------TGFLFVTF 234

  Fly   278 TLCWLPYFCVAIAQLF--SICQSSSMIYKTTFSLAIANSALNPIIYSWKNSGFRRAFVQ----TL 336
            .|.|||...:.:.:|.  ......||:......||::......:||.:.|..|||:|:.    ::
 Worm   235 FLSWLPLITLKVCELIWGPFDMDLSMLTFFFVWLAVSGPCCKFLIYMFTNHQFRRSFLSYISCSM 299

  Fly   337 CCRTARQCE 345
            ||.:..:.|
 Worm   300 CCSSRSRYE 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mAChR-CNP_572358.1 7tm_4 61..332 CDD:304433 73/289 (25%)
7tm_1 67..321 CDD:278431 65/272 (24%)
pcdr-1NP_510580.1 7tm_classA_rhodopsin-like 17..284 CDD:381740 73/295 (25%)
TM helix 1 17..41 CDD:381740 9/28 (32%)
TM helix 2 50..72 CDD:381740 5/21 (24%)
TM helix 3 91..113 CDD:381740 5/21 (24%)
TM helix 4 135..151 CDD:381740 4/17 (24%)
TM helix 5 175..198 CDD:381740 4/22 (18%)
TM helix 6 224..246 CDD:381740 7/30 (23%)
TM helix 7 259..284 CDD:381740 6/24 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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