DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mAChR-C and CHRM3

DIOPT Version :9

Sequence 1:NP_572358.1 Gene:mAChR-C / 31626 FlyBaseID:FBgn0029909 Length:371 Species:Drosophila melanogaster
Sequence 2:NP_000731.1 Gene:CHRM3 / 1131 HGNCID:1952 Length:590 Species:Homo sapiens


Alignment Length:292 Identity:71/292 - (24%)
Similarity:120/292 - (41%) Gaps:41/292 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SSSSP-------AWDYRSSPEALGVVPFLWQHQNATETPTEITLQATSFGA----------GHLL 52
            |::||       :|.:  ||...|:.|....|..:    ..::..|.:|.:          ||.:
Human     7 STTSPLFPNISSSWIH--SPSDAGLPPGTVTHFGS----YNVSRAAGNFSSPDGTTDDPLGGHTV 65

  Fly    53 WLAI-----NAFLFVLILGGNILTIVAVRTCRHLRSVISNLFILSLAVSDFCVGLALPYHLVFYM 112
            |..:     ...|.::.:.||||.||:.:..:.|::| :|.|:||||.:|..:|:........|:
Human    66 WQVVFIAFLTGILALVTIIGNILVIVSFKVNKQLKTV-NNYFLLSLACADLIIGVISMNLFTTYI 129

  Fly   113 GSDIGAMRG-PCLLRFFLLICACCVSMLTLISIAVDRYIAVVYALHYRRYMTRRVAYSIIIFNWC 176
            ..:..|:.. .|.|...:...|...|::.|:.|:.|||.::...|.||...|.:.|..:|...|.
Human   130 IMNRWALGNLACDLWLAIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWV 194

  Fly   177 LG-ALVALLPVFWNRW------PDAQACEFDEVLAPGYIAGVITPGFVIIWICMFLVYWRIMREA 234
            :. .|.|...:||..:      |..: |....:..|....|.....|.:....|.::||||.:|.
Human   195 ISFVLWAPAILFWQYFVGKRTVPPGE-CFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYKET 258

  Fly   235 SKQALRLRQSVVYNTDEATTMRNLLLHPDWKS 266
            .|:...|.......|:..|   ...:||...|
Human   259 EKRTKELAGLQASGTEAET---ENFVHPTGSS 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mAChR-CNP_572358.1 7tm_4 61..332 CDD:304433 56/214 (26%)
7tm_1 67..321 CDD:278431 56/208 (27%)
CHRM3NP_000731.1 7tmA_mAChR_M3 66..>270 CDD:320426 53/205 (26%)
TM helix 1 70..96 CDD:320426 7/25 (28%)
TM helix 2 103..130 CDD:320426 9/26 (35%)
TM helix 3 141..171 CDD:320426 9/29 (31%)
Agonist binding. /evidence=ECO:0000250 148..152 0/3 (0%)
TM helix 4 183..206 CDD:320426 5/22 (23%)
TM helix 5 228..257 CDD:320426 8/28 (29%)
Basolateral sorting signal 275..281 1/8 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 323..357
7tm_GPCRs <484..564 CDD:391938
TM helix 6 487..512 CDD:341315
Agonist binding. /evidence=ECO:0000250 507..530
TM helix 7 523..548 CDD:341315
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.