DRSC/TRiP Functional Genomics Resources

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Protein Alignment mAChR-C and si:ch211-238p8.31

DIOPT Version :10

Sequence 1:NP_572358.1 Gene:mAChR-C / 31626 FlyBaseID:FBgn0029909 Length:371 Species:Drosophila melanogaster
Sequence 2:XP_017213583.1 Gene:si:ch211-238p8.31 / 108191511 ZFINID:ZDB-GENE-091113-50 Length:335 Species:Danio rerio


Alignment Length:282 Identity:67/282 - (23%)
Similarity:130/282 - (46%) Gaps:33/282 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 FLFVLILGG-----NILTIVAVRTCRHLRSVISNLFILSLAVSDFCVGL-ALPYHLV------FY 111
            ::|..:|..     |:|.|:::...:.|.:. :|:.||||||:|..||| .:|...:      :|
Zfish    35 YVFFSLLSAWTVFLNLLVIISISHFKKLHTP-TNMIILSLAVTDMFVGLIVIPVKAIKLIERCWY 98

  Fly   112 MGSDIGAMRGPCLLRFFLLICACCVSMLTLISIAVDRYIAVVYALHYRRYMTRRVAYSIIIFNWC 176
            .|...      |.|...::......|:..|:.||||||:||.:.|.|.:.:|.......|..:|.
Zfish    99 FGDTF------CGLFIIIIGVIFSASLSNLVLIAVDRYVAVCHPLLYPQKITMAKMLMSICLSWL 157

  Fly   177 LGALVALLPVFWNRWPD----AQAC--EFDEVLAPGYIAGVITPGFVIIWICMFLVYWRIMREAS 235
            ..:......:..|.:.|    ...|  |...:::..:|...::..|:...:.|..:|.||. .|.
Zfish   158 YYSAYNTALIINNGYFDTSNRTDMCNGECPVMVSFSWILTDLSMCFIFPCLIMITLYSRIF-FAV 221

  Fly   236 KQALRLRQSVVYNTDEATTMRNLLLHPDWKSVQIVVFIMGCFTLCWLPYFCVAIAQLFSICQSSS 300
            .|.:::..|:: ..|:.....::....:.|:...:..|:..:.||::||:..::     :..||:
Zfish   222 HQQVKVINSLM-KRDKCVMKGSVKRKSERKAALTLGIIVTIYLLCYIPYYICSL-----VIISST 280

  Fly   301 MIYKTTFSLAIANSALNPIIYS 322
            .:...|::: .|||.|||::|:
Zfish   281 ALNVLTWTM-YANSGLNPLVYA 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mAChR-CNP_572358.1 7tm_classA_rhodopsin-like 53..325 CDD:410626 67/282 (24%)
TM helix 1 53..78 CDD:410626 5/23 (22%)
TM helix 2 86..111 CDD:410626 12/31 (39%)
TM helix 3 123..153 CDD:410626 11/29 (38%)
TM helix 4 166..185 CDD:410626 2/18 (11%)
TM helix 5 204..229 CDD:410626 4/24 (17%)
TM helix 6 261..291 CDD:410626 6/29 (21%)
TM helix 7 300..325 CDD:410626 8/23 (35%)
si:ch211-238p8.31XP_017213583.1 7tmA_TAARs 32..310 CDD:320183 67/282 (24%)
TM helix 1 33..59 CDD:320183 5/23 (22%)
TM helix 2 66..92 CDD:320183 12/25 (48%)
TM helix 3 104..134 CDD:320183 11/29 (38%)
TM helix 4 146..169 CDD:320183 2/22 (9%)
TM helix 5 191..220 CDD:320183 6/29 (21%)
TM helix 6 246..275 CDD:320183 6/33 (18%)
TM helix 7 279..304 CDD:320183 9/24 (38%)

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