DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mAChR-C and taar12e

DIOPT Version :10

Sequence 1:NP_572358.1 Gene:mAChR-C / 31626 FlyBaseID:FBgn0029909 Length:371 Species:Drosophila melanogaster
Sequence 2:NP_001076563.1 Gene:taar12e / 100034600 ZFINID:ZDB-GENE-041014-51 Length:337 Species:Danio rerio


Alignment Length:311 Identity:83/311 - (26%)
Similarity:133/311 - (42%) Gaps:42/311 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 LAINAFLFVLILG---GNILTIVAVRTCRHLRSVISNLFILSLAVSDFCVG-LALPYHLV----- 109
            :.:..||.::||.   ||:|.|:::...:||:|. ::|.:.|||..|..:| |.:||.:|     
Zfish    34 VGLYVFLLLMILTTVFGNLLIIISISHFKHLQSP-THLIVRSLAACDCLLGLLVMPYSMVRSVEG 97

  Fly   110 -FYMGSDIGAMRGPCLLRFFLLICACCVSMLTLISIAVDRYIAVVYALHYRRYMTRRVAYSIIIF 173
             :|:|..:      |.:...|.:..|..|:|.|..|:||||.|:...|.||..:|.......|:|
Zfish    98 CWYLGDVV------CKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVF 156

  Fly   174 NWCLGALVALLPVFWNRWPDAQACEFDEVLAPGYIAGVITPGFVIIW--ICMFLV---------- 226
            .|....:.:...||    ........:..:...|..|.....|...|  ||..||          
Zfish   157 IWLFSFVYSFYVVF----SGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSS 217

  Fly   227 -YWRIMREASKQALRLRQSVVYNTDEATTMRNLLLHPDWKSVQIVVFIMGCFTLCWLPYFCVAIA 290
             |.:|...|.|.|..:.:.|.......::.:.     :.|:.:|:..:||.|..||||:|.|...
Zfish   218 LYMKIFHVARKHAKVMSERVTGGLKSQSSAQR-----ERKAAKILAIVMGVFLFCWLPFFTVNAL 277

  Fly   291 QLFSICQSSSMIYKTTFSLAIANSALNPIIYSWKNSGFRRAF---VQTLCC 338
            ..|....:.:.|:......|..||..||:||.:....|::||   :.|..|
Zfish   278 DPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYIC 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mAChR-CNP_572358.1 7tm_classA_rhodopsin-like 53..325 CDD:410626 78/293 (27%)
TM helix 1 53..78 CDD:410626 8/26 (31%)
TM helix 2 86..111 CDD:410626 10/31 (32%)
TM helix 3 123..153 CDD:410626 12/29 (41%)
TM helix 4 166..185 CDD:410626 3/18 (17%)
TM helix 5 204..229 CDD:410626 9/37 (24%)
TM helix 6 261..291 CDD:410626 11/29 (38%)
TM helix 7 300..325 CDD:410626 8/24 (33%)
taar12eNP_001076563.1 7tm_GPCRs 34..319 CDD:475119 79/300 (26%)
TM helix 1 36..60 CDD:410628 8/23 (35%)
TM helix 2 69..91 CDD:410628 9/21 (43%)
TM helix 3 107..129 CDD:410628 6/21 (29%)
TM helix 4 152..168 CDD:410628 3/15 (20%)
TM helix 5 197..220 CDD:410628 5/22 (23%)
TM helix 6 254..276 CDD:410628 10/21 (48%)
TM helix 7 287..312 CDD:410628 8/24 (33%)

Return to query results.
Submit another query.