DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nonC and STT4

DIOPT Version :9

Sequence 1:NP_001284967.1 Gene:nonC / 31625 FlyBaseID:FBgn0263968 Length:3218 Species:Drosophila melanogaster
Sequence 2:NP_013408.1 Gene:STT4 / 851014 SGDID:S000004296 Length:1900 Species:Saccharomyces cerevisiae


Alignment Length:2243 Identity:387/2243 - (17%)
Similarity:712/2243 - (31%) Gaps:762/2243 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 RLSKIIR---RLINENNP--TVSLELCSKLDQAV-RTPI---NMGYMTCSFVWILDNMLTLY--K 183
            |:|.::.   :|....||  .::.:|...:.||. :.|:   |:|.:..::   .:.:|.::  |
Yeast   103 RISDVLSSKFKLEQMRNPIELLTFQLTKFMIQACEQYPVLYENIGGIISTY---FERVLKIFTIK 164

  Fly   184 QCPPPVLEECSKTLGLIGFINRKSYPIYEEFIVKNYKSSKRMQKY-----MIMALRATLSCDTKC 243
            |         |..|.|:||||        .||  .:.:|..:.|:     ..:.||.:...:   
Yeast   165 Q---------SGLLSLVGFIN--------AFI--QFPNSTELTKFTWKKLAKLVLRGSFLNE--- 207

  Fly   244 ELHMYADKIMLLLKDFLENAESADIFIVVSNTLVQFAASYAETFECHFTDVVDIVIGWQLEAGQP 308
                 .|||:          .|:..|  .::::||:..:..|....:..:::.     :|:....
Yeast   208 -----VDKIL----------NSSATF--TNDSIVQYYDAGNELSSAYLLELIS-----RLQVSLI 250

  Fly   309 TDLKTHCAQVLEQLTPFFSKQIDFSYGLLDQFVEDITTLEEGEPANTAERVGAFVGAFNTLLKCL 373
            :.| .:.:.|...|:.|...| .:.:...||.|.|       |..:|               ||:
Yeast   251 SHL-LNTSHVGANLSEFLLNQ-QYQFYKFDQEVAD-------ENDDT---------------KCI 291

  Fly   374 --------ARMQIFVGMPTCECIVKMAVD-HLIKIMPTLHLNTEALVNINELICICLLNNFTGLD 429
                    :..|.|..|  |:..::...: |::.:..............:.|..:||:......:
Yeast   292 DDFFFNVRSNKQFFTDM--CKISLQFCSESHILDLSTDNRARFSFDTRAHYLQTLCLIPFIEDTE 354

  Fly   430 PILLEQVLLDQVKRMISLTELQRQSVLYLLLCTVRRLRARLTPSLVHFIFQS----NPYMTKVRL 490
            ..|.|           |.|.:..:|:....|..|      :||||:..|..|    |.:..|:.|
Yeast   355 SELFE-----------SFTNVVSESIDKFFLSDV------VTPSLIKAIVASASLLNFFTEKLSL 402

  Fly   491 RSPGETSYKLLLRTCQETLLIRNVPLLQQAYKYLVDDIDACLEKLLITAPRSKARKASVLLVFHL 555
                              .|||..||| .|..::..:....:.|:..|........|.|..::.:
Yeast   403 ------------------TLIRMFPLL-VASPHITTETVNDVAKIFTTGLYPLNEDAIVSTIYSM 448

  Fly   556 SALAALAKQTSSIIGMYACKPSILE-----------------------------LLLTNCRAHEL 591
            :.|.|:::..|.:       |.:.|                             .||.|....:|
Yeast   449 NNLLAVSEDGSPV-------PVLRERQLTITSGKNIEKDYFPLRNSSASLDGTGALLGNTTVGQL 506

  Fly   592 KFWSKYPAAQQAIFGLLVVHCQANHNFRTNSSLLRDQELSAENTSPTANSFASILRFLDSV-LGQ 655
            ........|.......|:.:|.|...  |.:|....|.::|...|.......|:.:.||.| |..
Yeast   507 SSHDVNSGATMTYHASLISNCVAATT--TIASYYNTQSITALTISILTQKVNSMSKELDGVILNS 569

  Fly   656 AHQLAPQNLRVLLQWIQMLLRECREKIDLLMEQENFRGICRNIAATASKLVPLESAACIQTVLDY 720
            ..:|||   ...|....:||:..:.               |.:.||     .::.:|.::.::. 
Yeast   570 LARLAP---NTSLTEFSLLLKFFKS---------------RTVIAT-----KIDDSALLKNIIK- 610

  Fly   721 GLERLEKYPKLLILYRDTALQQLQMLSTNYHAPYFQIYAQLPLHLTLTGGESSMPGMASRRVSVW 785
                    .|.:|        ..::|:.::.:..:.:|....|...:..||              
Yeast   611 --------AKCVI--------SKELLARHFSSDLYFMYLHDLLDSIIASGE-------------- 645

  Fly   786 QQRISQYSAVRDNVFRDFFDRVQKPEQDSLIHCLRELFVRSCQVAPQDERQMNLSQCTKRCQRLA 850
            .:|:..:....:      ..||    .|.:...|..|   :..:....:..:::::......:..
Yeast   646 VERLEHHRPQTE------ISRV----ADQIATYLEPL---AALLPVPGDTPLDINKDEVTTNKFR 697

  Fly   851 IAWLQFEAARYCVDQRLRTTVGKPQETFLGFEAIIMRHARLLSGCAKEIERSALDDLSLEELLSM 915
            .||..|....|        .:|.|         |:.|                            
Yeast   698 NAWFNFVIHGY--------HLGGP---------IVKR---------------------------- 717

  Fly   916 QSNLSLLLGFLDALEKLIYNAAEGSAFALRPPEKQVAAFFRLNNPTCQSWFNRI-RIGVVIIAMH 979
              |.|.||       .:.||:         ||   :|:.|..||.......|.| |.|.....:.
Yeast   718 --NFSFLL-------TIAYNS---------PP---LASEFPANNKELSLEMNTILRRGSSNENIK 761

  Fly   980 VQQPELVIRYAQQILVNSKTQDPTYSQAIVYMAWSL----VSCQEADSLRGLRLWARGKSCKSYK 1040
             ||.:.:..|....:|..:|   |.|..|:::|.::    :.|:..|             |.  |
Yeast   762 -QQKQQITEYFNTNIVQYRT---TSSSKIMFLAAAVLLETIRCEAGD-------------CS--K 807

  Fly  1041 WLKYAADQA--AGKRESALAGYRTILAEKELQSELEPHTRQFVVSQMMQCLQDLGQWSQLVELKQ 1103
            .|.|.:|.:  :|..|..:|                      |:|..|                 
Yeast   808 TLLYFSDPSILSGSIEKCIA----------------------VLSVSM----------------- 833

  Fly  1104 QQMTRPEDRELNPFLQRSNVEVNALERLLAKSEESCSSMDALGGVFQQLSLWPSNWDESVSSSGL 1168
                                 :....||:.|..::..:...:......|.|..|:.:.::     
Yeast   834 ---------------------IRKYARLIQKGNDAIFNSKMIAQQLNNLLLCLSHREPTL----- 872

  Fly  1169 SERASFSSIHMRQRTEDIVLHKLLEDRCVPDQAKNLLD--TQWRDSLLNPSFDQRSCKELTLLRH 1231
             :.|:|.:.       :|.:..:....|.......|||  |...||:|:....:...:....|:|
Yeast   873 -QDAAFHAC-------EIFIRSIPSSLCHHLSLYTLLDMLTALFDSILDSEAHKFEPRYEFKLKH 929

  Fly  1232 IVQGVSGGQELSLLPVSSGRCQNRSKFISSAILMRCLAW--TQLLRQHCAPGSWETLCLDAAAAA 1294
                   .:...|:|.||                   :|  |.|.|.|.:...|..:.|      
Yeast   930 -------SKTTILVPSSS-------------------SWRATTLSRLHKSAKEWVRILL------ 962

  Fly  1295 REEGNLQLAET-LLTQFFGQPIGEIAALFSLEQGVQ-----------------------TDNPEM 1335
                |....:| :|.|.:...:||.:.|.|:|.||.                       .:.|..
Yeast   963 ----NRSNQDTKILLQSYISDLGEYSRLNSVEFGVSFAMDMAGLILPADKELSRLTYYGPEKPNT 1023

  Fly  1336 LRGYSELVKCLHLQQQQSQTHSGDLSSSIDVCAALCLNIQKSNNQPAAGADLLL-NLADWIAVRT 1399
            :.|:..    ||..:.:....:...||..|:...:.::.|........|..::. ::.|::.:.|
Yeast  1024 ISGFIS----LHSWRSKYLFDTAITSSPEDIKRQIGISTQNIRKNLTLGNKIITKDVTDFLDMAT 1084

  Fly  1400 CNGLTTNQSPVLIQLLDQLPECPLTCDSSQPLAIPQAERMVARLVHSCLQQRPNYAEALIAYGNW 1464
            ...:..|.:|.  .|:..:...|....:|..|      ::...:..:.:.::|..|..|:.  ..
Yeast  1085 ALLILGNGAPA--SLIYDIVHIPFEVFTSASL------KIATNVWLTIITEKPEVAHLLLV--EV 1139

  Fly  1465 CYRWGKKVADSCCVLTQADATAISQALDIPQPLESEKLDELLQALSTEQPPANCVEVCPDAARAR 1529
            ||.|.:.:.|:..:.::            ...|:.|:..::      |..|.:...:..||..| 
Yeast  1140 CYCWMRSIDDNIGLYSR------------DHDLKGEEYQKM------EYSPYDKAGINRDAKNA- 1185

  Fly  1530 DDEAAKNRLRRLTFLADKTPEAL---DAILQIWRR-AIANTYDYYKDAARSYFQYL--------- 1581
             .:|.:..|..:.|.|......|   |.:|:|:.: |:....:.||.:...:.:.:         
Yeast  1186 -SQAMQPHLHVIKFFASHFEGTLFQSDFLLKIFTKCALYGIKNLYKASLHPFARMIRHELLLFAT 1249

  Fly  1582 -----SFKSGS---GPEKPE-GEGVVSQRER----------LHVDDSNLVTTTL-----RLLRLI 1622
                 |:|.||   |....| ..|.:|..:|          |.:.....||..|     :|..|:
Yeast  1250 LVLNASYKQGSKYMGRLSQEITNGALSWFKRPVAWPFGSNELKIKADLSVTRDLFLQLNKLSSLM 1314

  Fly  1623 VKHASGLQEVLEQGL--HTTPIAPW-----KV-----------IIPQLFSRLNHHEP-------- 1661
            .:|.....::|...|  ....|..|     |:           |:...|::    :|        
Yeast  1315 SRHCGKDYKILNYFLASEIQQIQTWLTPTEKIEGADSNELTSDIVEATFAK----DPTLAINLLQ 1375

  Fly  1662 --YVRKSVCDLLCRLAKSRPQLVIFPAVVG--------ANREQQDATAPPATARPTTE------- 1709
              |.:|:...|:..:||.....|..|:.:.        ::::...||...|...|...       
Yeast  1376 RCYSKKAEDVLVGLVAKHALMCVGSPSALDLFIKGSHLSSKKDLHATLYWAPVSPLKSINLFLPE 1440

  Fly  1710 ---DACCYGYLLGELSKQ--------APEAVQ--------HVKLMVKELRRVCLLWDEYWI-HSL 1754
               ::....:.:..|..|        .|:.||        :|:.::.:..::.:|:....| :.|
Yeast  1441 WQGNSFILQFSIYSLESQDVNLAFFYVPQIVQCLRYDKTGYVERLILDTAKISVLFSHQIIWNML 1505

  Fly  1755 AHIYNTYVSRVSALATDFRPDDHEGKNNRFNVWRPQLLADLEALVAVTSRPPETTYERSFRKRFD 1819
            |:.|.                |.||...  :..:|.|....|.:|:..|:.....|||.| :.||
Yeast  1506 ANCYK----------------DDEGIQE--DEIKPTLDRIRERMVSSFSQSHRDFYEREF-EFFD 1551

  Fly  1820 ---------APIRLTVDALRHRRYPEAWDKLK---QLYHILQSN-------MIRGSGSTLKMQSI 1865
                     .|......|.:..:..|...|::   .:|  |.||       :.|.||..|:..:.
Yeast  1552 EVTGISGKLKPYIKKSKAEKKHKIDEEMSKIEVKPDVY--LPSNPDGVVIDIDRKSGKPLQSHAK 1614

  Fly  1866 SPVLCGIGRMRISMPGLDAHGPDGDQVYIESVESSVCVLPTKTKPKKVAFYGSNGQRYTFLFKGM 1930
            :|.:   ...:|.....|                     |...|.|:|..:      ...:||..
Yeast  1615 APFM---ATFKIKKDVKD---------------------PLTGKNKEVEKW------QAAIFKVG 1649

  Fly  1931 EDLHLDERIMQFLSISNAIMACRSDAPGNGCYRAHHYSVIPLGPQSGLISWVDGVTPVFALYKKW 1995
            :|...|...:|.:|:...|.:    :.|...| ...|.|....|..|:|.    |.|        
Yeast  1650 DDCRQDVLALQLISLFRTIWS----SIGLDVY-VFPYRVTATAPGCGVID----VLP-------- 1697

  Fly  1996 QQRRSQVAGNAGAGAVANVPRRFTDLFYNKLSPLLAKHNMQVSDPRRQWPISVLLQVLDELSQET 2060
               .|......|..||..:...||..|.|:                                   
Yeast  1698 ---NSVSRDMLGREAVNGLYEYFTSKFGNE----------------------------------- 1724

  Fly  2061 PNDLLARELWCQAGNAAEWRQSVRRFVRCMSVMSMIGYVIGLGDRHLDNVLINLGSGDIVHIDYN 2125
                          :..|::.:...||:.::..|:|.|::...|||..|::.: ..|..:|||:.
Yeast  1725 --------------STIEFQNARNNFVKSLAGYSVISYLLQFKDRHNGNIMYD-DQGHCLHIDFG 1774

  Fly  2126 VCFEKGRTLRIP-----EKVPFRLTQNLVQAMG 2153
            ..|:     .:|     |.|||:||:.:|:.||
Yeast  1775 FIFD-----IVPGGIKFEAVPFKLTKEMVKVMG 1802

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nonCNP_001284967.1 SMG1 571..1140 CDD:292413 92/605 (15%)
Rapamycin_bind 1738..1845 CDD:285924 23/119 (19%)
PIKKc_SMG1 1894..2196 CDD:270714 53/265 (20%)
FATC 3189..3217 CDD:280430
STT4NP_013408.1 TEL1 1..1900 CDD:227365 387/2243 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5032
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.